RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 TPM3P06753 285 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 DCTN1Q14203 1278 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 MAFGO15525 162 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 ZNF771Q7L3S4 317 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 NAP1L2Q9ULW6 460 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 PDE3BQ13370 1112 aa4.65□□□□□ -1.66
SYNE2-202ENST00000344113 CCDC70Q6NSX1 233 aa4.65□□□□□ -1.66
SYNE2-202ENST00000344113 TUBB4BP68371 445 aa4.65□□□□□ -1.66
SYNE2-202ENST00000344113 HNRNPUL2Q1KMD3 747 aaKnown RBP4.65□□□□□ -1.66
SYNE2-202ENST00000344113 TUBB4AP04350 444 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 GOLGA6L10A0A0M3HER8 536 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 GOLGA6L19H0YKK7 550 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 TPM4P67936 248 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 TPRNQ4KMQ1 711 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 FEZ2Q9UHY8 353 aaPredicted RBP4.65□□□□□ -1.67
SYNE2-202ENST00000344113 PIK3R5Q8WYR1 880 aa4.65□□□□□ -1.67
SYNE2-202ENST00000344113 GRIPAP1Q4V328 841 aa4.64□□□□□ -1.67
SYNE2-202ENST00000344113 AK7Q96M32 723 aa4.64□□□□□ -1.67
SYNE2-202ENST00000344113 ZRSR2Q15696 482 aaKnown RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 DDX11Q96FC9 970 aa4.64□□□□□ -1.67
SYNE2-202ENST00000344113 RBM25P49756 843 aaKnown RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 GABPB1Q06547 395 aaPredicted RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 PRIMPOLQ96LW4 560 aa4.64□□□□□ -1.67
SYNE2-202ENST00000344113 PHLDB1Q86UU1 1377 aa4.64□□□□□ -1.67
SYNE2-202ENST00000344113 SNRNP27Q8WVK2 155 aaKnown RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 HMGB3O15347 200 aaKnown RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 KTN1Q86UP2 1357 aaKnown RBP4.64□□□□□ -1.67
SYNE2-202ENST00000344113 TTC36A6NLP5 189 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 NEXNQ0ZGT2 675 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 SUDS3Q9H7L9 328 aaPredicted RBP4.63□□□□□ -1.67
SYNE2-202ENST00000344113 MPHOSPH10O00566 681 aaKnown RBP4.63□□□□□ -1.67
SYNE2-202ENST00000344113 CCDC34Q96HJ3 373 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 FAM210AQ96ND0 272 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 RBM26Q5T8P6 1007 aaKnown RBP4.63□□□□□ -1.67
SYNE2-202ENST00000344113 V9GYY5 206 aaPredicted RBP4.63□□□□□ -1.67
SYNE2-202ENST00000344113 RAI14Q9P0K7 980 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 RGS3P49796 1198 aa4.63□□□□□ -1.67
SYNE2-202ENST00000344113 GOLGA6L7A0A1B0GV03 622 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 A6NNZ2 444 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 EIF3JO75822 258 aaKnown RBP4.62□□□□□ -1.67
SYNE2-202ENST00000344113 TUBB8Q3ZCM7 444 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 RRP12Q5JTH9 1297 aaKnown RBP4.62□□□□□ -1.67
SYNE2-202ENST00000344113 GOLGA6L9A6NEM1 432 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 ESPNB1AK53 854 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 TERF2IPQ9NYB0 399 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 NPHP1O15259 732 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 ZRANB2O95218 330 aaKnown RBP eCLIP4.62□□□□□ -1.67
SYNE2-202ENST00000344113 HSCBQ8IWL3 235 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 MIPOL1Q8TD10 442 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 PLCB2Q00722 1185 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 TIGD1Q96MW7 591 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 ITGB1BP2Q9UKP3 347 aa4.62□□□□□ -1.67
SYNE2-202ENST00000344113 CIZ1Q9ULV3 898 aaPredicted RBP4.62□□□□□ -1.67
SYNE2-202ENST00000344113 U2SURPO15042 1029 aaKnown RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 UTP14AQ9BVJ6 771 aaKnown RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 MEX3CQ5U5Q3 659 aaKnown RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 LMNB2Q03252 620 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 PAK3O75914 559 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 GBP2P32456 591 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 TMED1Q13445 227 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 ERCC4Q92889 916 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-202ENST00000344113 CCP110O43303 1012 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 KIF3CO14782 793 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 LEKR1Q6ZMV7 388 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 NBPF1Q3BBV0 1214 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 ERCC3P19447 782 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 RABEP1Q15276 862 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 KIF16BQ96L93 1317 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 INSRP06213 1382 aa4.61□□□□□ -1.67
SYNE2-202ENST00000344113 ZBED9Q6R2W3 1325 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 TRIM52Q96A61 297 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 NBPF11Q86T75 865 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 IBTKQ9P2D0 1353 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-202ENST00000344113 SEPT14Q6ZU15 432 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 E9PSI1 815 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 NBPF3Q9H094 633 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 KIAA1328Q86T90 577 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 ZSCAN30Q86W11 494 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 HDAC1Q13547 482 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-202ENST00000344113 SCAPERQ9BY12 1400 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 FAM50AQ14320 339 aaKnown RBP4.6□□□□□ -1.67
SYNE2-202ENST00000344113 RNF20Q5VTR2 975 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 PRPF40AO75400 957 aaKnown RBP4.6□□□□□ -1.67
SYNE2-202ENST00000344113 SYCP1Q15431 976 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 CHMP4CQ96CF2 233 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 STK31Q9BXU1 1019 aa4.6□□□□□ -1.67
SYNE2-202ENST00000344113 LUZP1Q86V48 1076 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 AEBP1Q8IUX7 1158 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 CCDC173Q0VFZ6 552 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 DMTNQ08495 405 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 B4GALNT3Q6L9W6 998 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 SF3B2Q13435 895 aaKnown RBP4.59□□□□□ -1.67
SYNE2-202ENST00000344113 MRVI1Q9Y6F6 885 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 GPATCH11Q8N954 259 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 FAM184AQ8NB25 1140 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 TPM1P09493 284 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 HNRNPUQ00839 825 aaKnown RBP eCLIP4.59□□□□□ -1.67
SYNE2-202ENST00000344113 NUB1Q9Y5A7 615 aa4.59□□□□□ -1.67
SYNE2-202ENST00000344113 TUBBP07437 444 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms