RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 DISP1Q96F81 1524 aa12.78□□□□□ -0.36
HOXA1-201ENST00000343060 ZNF608Q9ULD9 1512 aaPredicted RBP12.78□□□□□ -0.36
HOXA1-201ENST00000343060 PKD2Q13563 968 aa12.77□□□□□ -0.37
HOXA1-201ENST00000343060 CARD11Q9BXL7 1154 aa12.77□□□□□ -0.37
HOXA1-201ENST00000343060 GPATCH8Q9UKJ3 1502 aaKnown RBP12.77□□□□□ -0.37
HOXA1-201ENST00000343060 LAMC1P11047 1609 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 CNGB1Q14028 1251 aaPredicted RBP12.76□□□□□ -0.37
HOXA1-201ENST00000343060 KDM2BQ8NHM5 1336 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 ANKRD30AQ9BXX3 1397 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 PTPRGP23470 1445 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 TRPM1Q7Z4N2 1603 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 SENP3-EIF4A1A0A087X0R7 540 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 NFKBIBQ15653 356 aa12.76□□□□□ -0.37
HOXA1-201ENST00000343060 PDS5BQ9NTI5 1447 aa12.75□□□□□ -0.37
HOXA1-201ENST00000343060 ANKRD50Q9ULJ7 1429 aa12.75□□□□□ -0.37
HOXA1-201ENST00000343060 ZNF326Q5BKZ1 582 aaKnown RBP12.75□□□□□ -0.37
HOXA1-201ENST00000343060 ST20-MTHFSA0A0A6YYL1 179 aa12.74□□□□□ -0.37
HOXA1-201ENST00000343060 BRPF3Q9ULD4 1205 aa12.73□□□□□ -0.37
HOXA1-201ENST00000343060 CDC42BPAQ5VT25 1732 aa12.73□□□□□ -0.37
HOXA1-201ENST00000343060 COL17A1Q9UMD9 1497 aaPredicted RBP12.73□□□□□ -0.37
HOXA1-201ENST00000343060 CRBNQ96SW2 442 aa12.73□□□□□ -0.37
HOXA1-201ENST00000343060 GPRASP1Q5JY77 1395 aa12.72□□□□□ -0.37
HOXA1-201ENST00000343060 EIF4G3O43432 1585 aaKnown RBP12.72□□□□□ -0.37
HOXA1-201ENST00000343060 PER1O15534 1290 aaPredicted RBP12.71□□□□□ -0.37
HOXA1-201ENST00000343060 UBE2Q2Q8WVN8 375 aa12.71□□□□□ -0.37
HOXA1-201ENST00000343060 CDCA7LQ96GN5 454 aa12.71□□□□□ -0.37
HOXA1-201ENST00000343060 PRG4Q92954 1404 aaPredicted RBP12.71□□□□□ -0.37
HOXA1-201ENST00000343060 PRAG1Q86YV5 1406 aa12.7□□□□□ -0.38
HOXA1-201ENST00000343060 FRAT1Q92837 279 aaPredicted RBP12.7□□□□□ -0.38
HOXA1-201ENST00000343060 VIRMAQ69YN4 1812 aaKnown RBP12.7□□□□□ -0.38
HOXA1-201ENST00000343060 CENPQQ7L2Z9 268 aaPredicted RBP12.69□□□□□ -0.38
HOXA1-201ENST00000343060 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.69□□□□□ -0.38
HOXA1-201ENST00000343060 CFDP1Q9UEE9 299 aaPredicted RBP12.69□□□□□ -0.38
HOXA1-201ENST00000343060 PRDM15P57071 1507 aaPredicted RBP12.69□□□□□ -0.38
HOXA1-201ENST00000343060 CLASP1Q7Z460 1538 aa12.69□□□□□ -0.38
HOXA1-201ENST00000343060 ARID3CA6NKF2 412 aa12.69□□□□□ -0.38
HOXA1-201ENST00000343060 NUP155O75694 1391 aa12.68□□□□□ -0.38
HOXA1-201ENST00000343060 PLIN1O60240 522 aa12.68□□□□□ -0.38
HOXA1-201ENST00000343060 FAM161AQ3B820 660 aa12.68□□□□□ -0.38
HOXA1-201ENST00000343060 C8orf34Q49A92 452 aa12.68□□□□□ -0.38
HOXA1-201ENST00000343060 C9orf84Q5VXU9 1444 aa12.67□□□□□ -0.38
HOXA1-201ENST00000343060 SKAP1Q86WV1 359 aa12.66□□□□□ -0.38
HOXA1-201ENST00000343060 ABCC10Q5T3U5 1492 aa12.66□□□□□ -0.38
HOXA1-201ENST00000343060 ARHGEF5Q12774 1597 aa12.65□□□□□ -0.38
HOXA1-201ENST00000343060 FAM43AQ8N2R8 423 aa12.64□□□□□ -0.39
HOXA1-201ENST00000343060 EIF2AK4Q9P2K8 1649 aaKnown RBP12.64□□□□□ -0.39
HOXA1-201ENST00000343060 C20orf194Q5TEA3 1177 aa12.64□□□□□ -0.39
HOXA1-201ENST00000343060 ZNF521Q96K83 1311 aa12.63□□□□□ -0.39
HOXA1-201ENST00000343060 FAM135AQ9P2D6 1515 aa12.63□□□□□ -0.39
HOXA1-201ENST00000343060 DCAF11Q8TEB1 546 aa12.62□□□□□ -0.39
HOXA1-201ENST00000343060 DAXXQ9UER7 740 aaPredicted RBP12.62□□□□□ -0.39
HOXA1-201ENST00000343060 RNF17Q9BXT8 1623 aaKnown RBP12.62□□□□□ -0.39
HOXA1-201ENST00000343060 SLC4A3P48751 1232 aa12.62□□□□□ -0.39
HOXA1-201ENST00000343060 DISP3Q9P2K9 1392 aa12.62□□□□□ -0.39
HOXA1-201ENST00000343060 TESK2Q96S53 571 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 RSPH6AQ9H0K4 717 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 A2MP01023 1474 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 NUP160Q12769 1436 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 EIF3AQ14152 1382 aaKnown RBP12.61□□□□□ -0.39
HOXA1-201ENST00000343060 DUSP27Q5VZP5 1158 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 SYNJ2O15056 1496 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 GRIN2AQ12879 1464 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 ERBINQ96RT1 1412 aa12.61□□□□□ -0.39
HOXA1-201ENST00000343060 PLEKHH1Q9ULM0 1364 aa12.6□□□□□ -0.39
HOXA1-201ENST00000343060 KDM2AQ9Y2K7 1162 aa12.6□□□□□ -0.39
HOXA1-201ENST00000343060 PLB1Q6P1J6 1458 aa12.6□□□□□ -0.39
HOXA1-201ENST00000343060 FRAT2O75474 233 aaPredicted RBP12.6□□□□□ -0.39
HOXA1-201ENST00000343060 UNC13BO14795 1591 aa12.6□□□□□ -0.39
HOXA1-201ENST00000343060 MYO5CQ9NQX4 1742 aa12.59□□□□□ -0.39
HOXA1-201ENST00000343060 CCDC141Q6ZP82 1450 aa12.59□□□□□ -0.39
HOXA1-201ENST00000343060 ABCA8O94911 1581 aa12.58□□□□□ -0.4
HOXA1-201ENST00000343060 CCDC144AA2RUR9 1427 aa12.58□□□□□ -0.4
HOXA1-201ENST00000343060 IFT140Q96RY7 1462 aa12.58□□□□□ -0.4
HOXA1-201ENST00000343060 MRC2Q9UBG0 1479 aa12.58□□□□□ -0.4
HOXA1-201ENST00000343060 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.57□□□□□ -0.4
HOXA1-201ENST00000343060 PLA2R1Q13018 1463 aa12.57□□□□□ -0.4
HOXA1-201ENST00000343060 CC2D1BQ5T0F9 858 aaKnown RBP12.56□□□□□ -0.4
HOXA1-201ENST00000343060 ZNF777Q9ULD5 760 aaPredicted RBP12.56□□□□□ -0.4
HOXA1-201ENST00000343060 USP19O94966 1318 aa12.56□□□□□ -0.4
HOXA1-201ENST00000343060 ABCC2Q92887 1545 aa12.56□□□□□ -0.4
HOXA1-201ENST00000343060 PANK3Q9H999 370 aa12.56□□□□□ -0.4
HOXA1-201ENST00000343060 WDR7Q9Y4E6 1490 aa12.56□□□□□ -0.4
HOXA1-201ENST00000343060 MAGI1Q96QZ7 1491 aaPredicted RBP12.55□□□□□ -0.4
HOXA1-201ENST00000343060 NLRP1Q9C000 1473 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 TRMT2AQ8IZ69 625 aaKnown RBP12.55□□□□□ -0.4
HOXA1-201ENST00000343060 ADAMTS8Q9UP79 889 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 PIK3C2GO75747 1445 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 SYNMO15061 1565 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 NBPF1Q3BBV0 1214 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 MAST1Q9Y2H9 1570 aa12.55□□□□□ -0.4
HOXA1-201ENST00000343060 ATP10AO60312 1499 aa12.54□□□□□ -0.4
HOXA1-201ENST00000343060 MAGI2Q86UL8 1455 aa12.54□□□□□ -0.4
HOXA1-201ENST00000343060 PLXNC1O60486 1568 aa12.54□□□□□ -0.4
HOXA1-201ENST00000343060 IQGAP3Q86VI3 1631 aa12.54□□□□□ -0.4
HOXA1-201ENST00000343060 IQGAP1P46940 1657 aa12.53□□□□□ -0.4
HOXA1-201ENST00000343060 GOLGA2Q08379 1002 aa12.53□□□□□ -0.4
HOXA1-201ENST00000343060 SLFN5Q08AF3 891 aa12.53□□□□□ -0.4
HOXA1-201ENST00000343060 TMF1P82094 1093 aa12.52□□□□□ -0.4
HOXA1-201ENST00000343060 NKTRP30414 1462 aaKnown RBP12.52□□□□□ -0.4
HOXA1-201ENST00000343060 ZMYM3Q14202 1370 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms