RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 MBD5Q9P267 1494 aa23.93■■□□□ 1.42
SMPD1-201ENST00000342245 XRCC6P12956 609 aaKnown RBP eCLIP23.91■■□□□ 1.42
SMPD1-201ENST00000342245 NLRP13Q86W25 1043 aa23.9■■□□□ 1.42
SMPD1-201ENST00000342245 LRRIQ1Q96JM4 1722 aa23.9■■□□□ 1.42
SMPD1-201ENST00000342245 ISY1Q9ULR0 285 aaKnown RBP23.89■■□□□ 1.41
SMPD1-201ENST00000342245 SKAP1Q86WV1 359 aa23.88■■□□□ 1.41
SMPD1-201ENST00000342245 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
SMPD1-201ENST00000342245 PLIN1O60240 522 aa23.87■■□□□ 1.41
SMPD1-201ENST00000342245 CNGB1Q14028 1251 aaPredicted RBP23.87■■□□□ 1.41
SMPD1-201ENST00000342245 POLR3GLQ9BT43 218 aa23.86■■□□□ 1.41
SMPD1-201ENST00000342245 E9PCH4 1651 aa23.86■■□□□ 1.41
SMPD1-201ENST00000342245 SENP3-EIF4A1A0A087X0R7 540 aa23.86■■□□□ 1.41
SMPD1-201ENST00000342245 MRE11P49959 708 aa23.86■■□□□ 1.41
SMPD1-201ENST00000342245 TARBP1Q13395 1621 aaKnown RBP23.85■■□□□ 1.41
SMPD1-201ENST00000342245 ROCK1Q13464 1354 aa23.85■■□□□ 1.41
SMPD1-201ENST00000342245 BLMP54132 1417 aaPredicted RBP23.84■■□□□ 1.41
SMPD1-201ENST00000342245 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.84■■□□□ 1.41
SMPD1-201ENST00000342245 CHIC2Q9UKJ5 165 aa23.82■■□□□ 1.4
SMPD1-201ENST00000342245 CDCA7LQ96GN5 454 aa23.81■■□□□ 1.4
SMPD1-201ENST00000342245 ESPNB1AK53 854 aa23.8■■□□□ 1.4
SMPD1-201ENST00000342245 FOXD1Q16676 465 aa23.8■■□□□ 1.4
SMPD1-201ENST00000342245 PARD3Q8TEW0 1356 aa23.8■■□□□ 1.4
SMPD1-201ENST00000342245 RBM10P98175 930 aaKnown RBP23.79■■□□□ 1.4
SMPD1-201ENST00000342245 ANTXR1Q9H6X2 564 aa23.79■■□□□ 1.4
SMPD1-201ENST00000342245 PRDM4Q9UKN5 801 aa23.79■■□□□ 1.4
SMPD1-201ENST00000342245 RALGAPBQ86X10 1494 aa23.78■■□□□ 1.4
SMPD1-201ENST00000342245 UHRF1BP1Q6BDS2 1440 aa23.77■■□□□ 1.4
SMPD1-201ENST00000342245 USP19O94966 1318 aa23.76■■□□□ 1.39
SMPD1-201ENST00000342245 MYH16Q9H6N6 1097 aa23.76■■□□□ 1.39
SMPD1-201ENST00000342245 MAGI3Q5TCQ9 1506 aa23.76■■□□□ 1.39
SMPD1-201ENST00000342245 EIF3AQ14152 1382 aaKnown RBP23.76■■□□□ 1.39
SMPD1-201ENST00000342245 AAMPQ13685 434 aa23.76■■□□□ 1.39
SMPD1-201ENST00000342245 MAP7D2Q96T17 732 aa23.74■■□□□ 1.39
SMPD1-201ENST00000342245 SLC4A1APQ9BWU0 796 aaKnown RBP23.73■■□□□ 1.39
SMPD1-201ENST00000342245 MAPK8IP3Q9UPT6 1336 aa23.72■■□□□ 1.39
SMPD1-201ENST00000342245 RGS3P49796 1198 aa23.72■■□□□ 1.39
SMPD1-201ENST00000342245 PBRM1Q86U86 1689 aa23.72■■□□□ 1.39
SMPD1-201ENST00000342245 C20orf194Q5TEA3 1177 aa23.72■■□□□ 1.39
SMPD1-201ENST00000342245 MCM4P33991 863 aa23.71■■□□□ 1.39
SMPD1-201ENST00000342245 PANK2Q9BZ23 570 aa23.71■■□□□ 1.39
SMPD1-201ENST00000342245 ARID3CA6NKF2 412 aa23.71■■□□□ 1.39
SMPD1-201ENST00000342245 SLKQ9H2G2 1235 aaPredicted RBP23.71■■□□□ 1.39
SMPD1-201ENST00000342245 TERF1P54274 439 aa23.7■■□□□ 1.38
SMPD1-201ENST00000342245 TRIM44Q96DX7 344 aaPredicted RBP23.7■■□□□ 1.38
SMPD1-201ENST00000342245 CCDC144AA2RUR9 1427 aa23.7■■□□□ 1.38
SMPD1-201ENST00000342245 UPF2Q9HAU5 1272 aaKnown RBP23.69■■□□□ 1.38
SMPD1-201ENST00000342245 ZMYM3Q14202 1370 aa23.68■■□□□ 1.38
SMPD1-201ENST00000342245 GRPEL1Q9HAV7 217 aa23.67■■□□□ 1.38
SMPD1-201ENST00000342245 IQGAP2Q13576 1575 aa23.66■■□□□ 1.38
SMPD1-201ENST00000342245 FGD1P98174 961 aa23.66■■□□□ 1.38
SMPD1-201ENST00000342245 ADAMTS12P58397 1594 aa23.66■■□□□ 1.38
SMPD1-201ENST00000342245 MRC2Q9UBG0 1479 aa23.65■■□□□ 1.38
SMPD1-201ENST00000342245 ARHGEF12Q9NZN5 1544 aa23.65■■□□□ 1.38
SMPD1-201ENST00000342245 NLRP1Q9C000 1473 aa23.65■■□□□ 1.38
SMPD1-201ENST00000342245 TRAK2O60296 914 aa23.64■■□□□ 1.37
SMPD1-201ENST00000342245 CDK13Q14004 1512 aaKnown RBP23.63■■□□□ 1.37
SMPD1-201ENST00000342245 DAPK1P53355 1430 aa23.63■■□□□ 1.37
SMPD1-201ENST00000342245 KIAA1107Q9UPP5 1409 aa23.63■■□□□ 1.37
SMPD1-201ENST00000342245 DDX11L8A8MPP1 907 aa23.62■■□□□ 1.37
SMPD1-201ENST00000342245 DNMT1P26358 1616 aaKnown RBP23.62■■□□□ 1.37
SMPD1-201ENST00000342245 CARD11Q9BXL7 1154 aa23.62■■□□□ 1.37
SMPD1-201ENST00000342245 EPRSP07814 1512 aaKnown RBP23.62■■□□□ 1.37
SMPD1-201ENST00000342245 ERBB4Q15303 1308 aa23.62■■□□□ 1.37
SMPD1-201ENST00000342245 PZPP20742 1482 aa23.61■■□□□ 1.37
SMPD1-201ENST00000342245 ZNF608Q9ULD9 1512 aaPredicted RBP23.6■■□□□ 1.37
SMPD1-201ENST00000342245 A0A0U1RQG5 324 aaPredicted RBP23.6■■□□□ 1.37
SMPD1-201ENST00000342245 CHMP5Q9NZZ3 219 aa23.6■■□□□ 1.37
SMPD1-201ENST00000342245 ARXQ96QS3 562 aa23.59■■□□□ 1.37
SMPD1-201ENST00000342245 MTERF4Q7Z6M4 381 aaKnown RBP23.58■■□□□ 1.37
SMPD1-201ENST00000342245 DUSP27Q5VZP5 1158 aa23.57■■□□□ 1.36
SMPD1-201ENST00000342245 KIAA1211Q6ZU35 1233 aa23.57■■□□□ 1.36
SMPD1-201ENST00000342245 SMAP1Q8IYB5 467 aaPredicted RBP23.57■■□□□ 1.36
SMPD1-201ENST00000342245 TBC1D32Q96NH3 1257 aa23.57■■□□□ 1.36
SMPD1-201ENST00000342245 TBC1D2Q9BYX2 928 aa23.57■■□□□ 1.36
SMPD1-201ENST00000342245 ZNF326Q5BKZ1 582 aaKnown RBP23.56■■□□□ 1.36
SMPD1-201ENST00000342245 GZF1Q9H116 711 aaPredicted RBP23.56■■□□□ 1.36
SMPD1-201ENST00000342245 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.55■■□□□ 1.36
SMPD1-201ENST00000342245 WDR62O43379 1518 aa23.55■■□□□ 1.36
SMPD1-201ENST00000342245 CLASP1Q7Z460 1538 aa23.55■■□□□ 1.36
SMPD1-201ENST00000342245 PTMSP20962 102 aa23.55■■□□□ 1.36
SMPD1-201ENST00000342245 NINLQ9Y2I6 1382 aa23.54■■□□□ 1.36
SMPD1-201ENST00000342245 ST20-MTHFSA0A0A6YYL1 179 aa23.53■■□□□ 1.36
SMPD1-201ENST00000342245 OFD1O75665 1012 aa23.53■■□□□ 1.36
SMPD1-201ENST00000342245 GOLGA2Q08379 1002 aa23.52■■□□□ 1.36
SMPD1-201ENST00000342245 ABCC5O15440 1437 aa23.52■■□□□ 1.36
SMPD1-201ENST00000342245 CGNL1Q0VF96 1302 aa23.51■■□□□ 1.35
SMPD1-201ENST00000342245 PER1O15534 1290 aaPredicted RBP23.51■■□□□ 1.35
SMPD1-201ENST00000342245 SEC24BO95487 1268 aa23.51■■□□□ 1.35
SMPD1-201ENST00000342245 CCDC173Q0VFZ6 552 aa23.5■■□□□ 1.35
SMPD1-201ENST00000342245 SCAPERQ9BY12 1400 aa23.5■■□□□ 1.35
SMPD1-201ENST00000342245 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
SMPD1-201ENST00000342245 ZNF521Q96K83 1311 aa23.49■■□□□ 1.35
SMPD1-201ENST00000342245 SKOR2Q2VWA4 1001 aaPredicted RBP23.49■■□□□ 1.35
SMPD1-201ENST00000342245 ZSCAN30Q86W11 494 aa23.48■■□□□ 1.35
SMPD1-201ENST00000342245 ANKRD30AQ9BXX3 1397 aa23.46■■□□□ 1.35
SMPD1-201ENST00000342245 PPP1R9BQ96SB3 815 aa23.45■■□□□ 1.34
SMPD1-201ENST00000342245 DISP1Q96F81 1524 aa23.45■■□□□ 1.34
SMPD1-201ENST00000342245 RIPK4P57078 832 aa23.44■■□□□ 1.34
SMPD1-201ENST00000342245 PDE3AQ14432 1141 aa23.44■■□□□ 1.34
SMPD1-201ENST00000342245 ADGBQ8N7X0 1667 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms