RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KIF15Q9NS87 1388 aa30■■■□□ 2.39
TRIM28-202ENST00000341753 EXOC6Q8TAG9 804 aa29.98■■■□□ 2.39
TRIM28-202ENST00000341753 MBD5Q9P267 1494 aa29.98■■■□□ 2.39
TRIM28-202ENST00000341753 KDM2AQ9Y2K7 1162 aa29.97■■■□□ 2.39
TRIM28-202ENST00000341753 CARD11Q9BXL7 1154 aa29.95■■■□□ 2.38
TRIM28-202ENST00000341753 RRP1P56182 461 aaKnown RBP29.92■■■□□ 2.38
TRIM28-202ENST00000341753 KDM5CP41229 1560 aa29.91■■■□□ 2.38
TRIM28-202ENST00000341753 SAMD9LQ8IVG5 1584 aa29.91■■■□□ 2.38
TRIM28-202ENST00000341753 SHANK2Q9UPX8 1470 aa29.9■■■□□ 2.38
TRIM28-202ENST00000341753 ST20-MTHFSA0A0A6YYL1 179 aa29.89■■■□□ 2.38
TRIM28-202ENST00000341753 CDC42BPBQ9Y5S2 1711 aa29.89■■■□□ 2.37
TRIM28-202ENST00000341753 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.88■■■□□ 2.372e-10■■■□□ 15.8
TRIM28-202ENST00000341753 LAS1LQ9Y4W2 734 aaKnown RBP29.88■■■□□ 2.37
TRIM28-202ENST00000341753 TTC37Q6PGP7 1564 aa29.85■■■□□ 2.37
TRIM28-202ENST00000341753 RCAN3Q9UKA8 241 aa29.85■■■□□ 2.37
TRIM28-202ENST00000341753 ARID4BQ4LE39 1312 aaPredicted RBP29.85■■■□□ 2.37
TRIM28-202ENST00000341753 LRPPRCP42704 1394 aaKnown RBP29.84■■■□□ 2.37
TRIM28-202ENST00000341753 CCDC141Q6ZP82 1450 aa29.84■■■□□ 2.37
TRIM28-202ENST00000341753 DCAF11Q8TEB1 546 aa29.83■■■□□ 2.37
TRIM28-202ENST00000341753 MYBBP1AQ9BQG0 1328 aaKnown RBP29.83■■■□□ 2.37
TRIM28-202ENST00000341753 SYCP2Q9BX26 1530 aa29.83■■■□□ 2.37
TRIM28-202ENST00000341753 ARHGAP5Q13017 1502 aa29.82■■■□□ 2.36
TRIM28-202ENST00000341753 ROCK2O75116 1388 aaKnown RBP29.82■■■□□ 2.36
TRIM28-202ENST00000341753 PDE4AP27815 886 aa29.81■■■□□ 2.36
TRIM28-202ENST00000341753 PREX2Q70Z35 1606 aa29.81■■■□□ 2.36
TRIM28-202ENST00000341753 SKAP1Q86WV1 359 aa29.8■■■□□ 2.36
TRIM28-202ENST00000341753 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.79■■■□□ 2.362e-7■■■□□ 18.9
TRIM28-202ENST00000341753 ARHGEF5Q12774 1597 aa29.79■■■□□ 2.36
TRIM28-202ENST00000341753 BRD4O60885 1362 aaPredicted RBP29.78■■■□□ 2.36
TRIM28-202ENST00000341753 CDCA7LQ96GN5 454 aa29.78■■■□□ 2.36
TRIM28-202ENST00000341753 RGL3Q3MIN7 710 aa29.77■■■□□ 2.36
TRIM28-202ENST00000341753 TCERG1O14776 1098 aaKnown RBP29.77■■■□□ 2.36
TRIM28-202ENST00000341753 RALGAPBQ86X10 1494 aa29.76■■■□□ 2.36
TRIM28-202ENST00000341753 SHROOM2Q13796 1616 aa29.76■■■□□ 2.35
TRIM28-202ENST00000341753 PLIN1O60240 522 aa29.76■■■□□ 2.35
TRIM28-202ENST00000341753 IL27Q8NEV9 243 aa29.75■■■□□ 2.35
TRIM28-202ENST00000341753 RALBP1Q15311 655 aa29.74■■■□□ 2.35
TRIM28-202ENST00000341753 NEFMP07197 916 aa29.74■■■□□ 2.35
TRIM28-202ENST00000341753 RTN4Q9NQC3 1192 aaKnown RBP29.72■■■□□ 2.35
TRIM28-202ENST00000341753 BACH2Q9BYV9 841 aa29.71■■■□□ 2.35
TRIM28-202ENST00000341753 UHRF1BP1Q6BDS2 1440 aa29.71■■■□□ 2.35
TRIM28-202ENST00000341753 ABCC2Q92887 1545 aa29.71■■■□□ 2.35
TRIM28-202ENST00000341753 FAM135AQ9P2D6 1515 aa29.71■■■□□ 2.35
TRIM28-202ENST00000341753 KDM5DQ9BY66 1539 aa29.71■■■□□ 2.35
TRIM28-202ENST00000341753 ARHGEF12Q9NZN5 1544 aa29.67■■■□□ 2.34
TRIM28-202ENST00000341753 PLEKHH2Q8IVE3 1493 aa29.67■■■□□ 2.34
TRIM28-202ENST00000341753 RSPH4AQ5TD94 716 aa29.66■■■□□ 2.34
TRIM28-202ENST00000341753 NLRP13Q86W25 1043 aa29.65■■■□□ 2.34
TRIM28-202ENST00000341753 ANO8Q9HCE9 1232 aaPredicted RBP29.65■■■□□ 2.34
TRIM28-202ENST00000341753 CC2D1BQ5T0F9 858 aaKnown RBP29.63■■■□□ 2.33
TRIM28-202ENST00000341753 KTN1Q86UP2 1357 aaKnown RBP29.62■■■□□ 2.33
TRIM28-202ENST00000341753 NBPF1Q3BBV0 1214 aa29.61■■■□□ 2.33
TRIM28-202ENST00000341753 CRBNQ96SW2 442 aa29.6■■■□□ 2.33
TRIM28-202ENST00000341753 CCDC144AA2RUR9 1427 aa29.6■■■□□ 2.33
TRIM28-202ENST00000341753 MYO5CQ9NQX4 1742 aa29.59■■■□□ 2.33
TRIM28-202ENST00000341753 PLA2R1Q13018 1463 aa29.59■■■□□ 2.33
TRIM28-202ENST00000341753 MS4A1P11836 297 aa29.58■■■□□ 2.33
TRIM28-202ENST00000341753 PDE3BQ13370 1112 aa29.57■■■□□ 2.32
TRIM28-202ENST00000341753 PARD3Q8TEW0 1356 aa29.56■■■□□ 2.32
TRIM28-202ENST00000341753 ZCCHC11Q5TAX3 1644 aaKnown RBP29.56■■■□□ 2.32
TRIM28-202ENST00000341753 TRAPPC8Q9Y2L5 1435 aa29.54■■■□□ 2.32
TRIM28-202ENST00000341753 EFCAB2Q5VUJ9 269 aa29.54■■■□□ 2.32
TRIM28-202ENST00000341753 AFAP1Q8N556 730 aa29.54■■■□□ 2.32
TRIM28-202ENST00000341753 E9PCH4 1651 aa29.53■■■□□ 2.32
TRIM28-202ENST00000341753 SLC4A3P48751 1232 aa29.52■■■□□ 2.32
TRIM28-202ENST00000341753 C20orf194Q5TEA3 1177 aa29.52■■■□□ 2.32
TRIM28-202ENST00000341753 PLCH2O75038 1416 aa29.52■■■□□ 2.32
TRIM28-202ENST00000341753 PER1O15534 1290 aaPredicted RBP29.51■■■□□ 2.32
TRIM28-202ENST00000341753 CLASP1Q7Z460 1538 aa29.51■■■□□ 2.31
TRIM28-202ENST00000341753 MAST1Q9Y2H9 1570 aa29.49■■■□□ 2.31
TRIM28-202ENST00000341753 PRAG1Q86YV5 1406 aa29.48■■■□□ 2.31
TRIM28-202ENST00000341753 USP35Q9P2H5 1018 aa29.47■■■□□ 2.31
TRIM28-202ENST00000341753 UNC13BO14795 1591 aa29.47■■■□□ 2.31
TRIM28-202ENST00000341753 PPM1GO15355 546 aaPredicted RBP29.47■■■□□ 2.31
TRIM28-202ENST00000341753 A2MP01023 1474 aa29.46■■■□□ 2.31
TRIM28-202ENST00000341753 PANK3Q9H999 370 aa29.44■■■□□ 2.3
TRIM28-202ENST00000341753 DISP3Q9P2K9 1392 aa29.42■■■□□ 2.3
TRIM28-202ENST00000341753 PLXNC1O60486 1568 aa29.42■■■□□ 2.3
TRIM28-202ENST00000341753 DUOX2Q9NRD8 1548 aa29.41■■■□□ 2.3
TRIM28-202ENST00000341753 SPAG9O60271 1321 aaKnown RBP29.4■■■□□ 2.3
TRIM28-202ENST00000341753 PRKCSHP14314 528 aaPredicted RBP29.39■■■□□ 2.3
TRIM28-202ENST00000341753 ABCC1P33527 1531 aa29.39■■■□□ 2.29
TRIM28-202ENST00000341753 IQGAP3Q86VI3 1631 aa29.38■■■□□ 2.29
TRIM28-202ENST00000341753 DDRGK1Q96HY6 314 aa29.38■■■□□ 2.29
TRIM28-202ENST00000341753 TRPM1Q7Z4N2 1603 aa29.37■■■□□ 2.29
TRIM28-202ENST00000341753 UHRF1BP1LA0JNW5 1464 aa29.37■■■□□ 2.29
TRIM28-202ENST00000341753 WASHC2CQ9Y4E1 1318 aa29.36■■■□□ 2.29
TRIM28-202ENST00000341753 BRPF3Q9ULD4 1205 aa29.36■■■□□ 2.29
TRIM28-202ENST00000341753 ADAMTS8Q9UP79 889 aa29.36■■■□□ 2.29
TRIM28-202ENST00000341753 BLMP54132 1417 aaPredicted RBP29.35■■■□□ 2.29
TRIM28-202ENST00000341753 TESK2Q96S53 571 aa29.35■■■□□ 2.29
TRIM28-202ENST00000341753 ERBINQ96RT1 1412 aa29.34■■■□□ 2.29
TRIM28-202ENST00000341753 NFKBIBQ15653 356 aa29.34■■■□□ 2.29
TRIM28-202ENST00000341753 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.33■■■□□ 2.29
TRIM28-202ENST00000341753 COL17A1Q9UMD9 1497 aaPredicted RBP29.3■■■□□ 2.28
TRIM28-202ENST00000341753 KDM2BQ8NHM5 1336 aa29.3■■■□□ 2.28
TRIM28-202ENST00000341753 DAXXQ9UER7 740 aaPredicted RBP29.29■■■□□ 2.28
TRIM28-202ENST00000341753 GSE1Q14687 1217 aa29.29■■■□□ 2.28
TRIM28-202ENST00000341753 MAGI2Q86UL8 1455 aa29.28■■■□□ 2.28
TRIM28-202ENST00000341753 RGS3P49796 1198 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms