RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 EVC2Q86UK5 1308 aa13.36□□□□□ -0.27
USP54-201ENST00000339859 FANCAO15360 1455 aa13.36□□□□□ -0.27
USP54-201ENST00000339859 THOC2Q8NI27 1593 aaKnown RBP13.36□□□□□ -0.27
USP54-201ENST00000339859 DHX57Q6P158 1386 aaKnown RBP13.36□□□□□ -0.27
USP54-201ENST00000339859 KTN1Q86UP2 1357 aaKnown RBP13.36□□□□□ -0.27
USP54-201ENST00000339859 ABCA5Q8WWZ7 1642 aa13.35□□□□□ -0.27
USP54-201ENST00000339859 WDR7Q9Y4E6 1490 aa13.35□□□□□ -0.27
USP54-201ENST00000339859 CAMSAP2Q08AD1 1489 aa13.35□□□□□ -0.27
USP54-201ENST00000339859 MEX3CQ5U5Q3 659 aaKnown RBP13.35□□□□□ -0.27
USP54-201ENST00000339859 NPHP1O15259 732 aa13.34□□□□□ -0.27
USP54-201ENST00000339859 NUP160Q12769 1436 aa13.33□□□□□ -0.27
USP54-201ENST00000339859 TXNDC2Q86VQ3 553 aa13.33□□□□□ -0.28
USP54-201ENST00000339859 LAS1LQ9Y4W2 734 aaKnown RBP13.33□□□□□ -0.28
USP54-201ENST00000339859 RTF1Q92541 710 aaKnown RBP13.32□□□□□ -0.28
USP54-201ENST00000339859 MAP3K1Q13233 1512 aa13.32□□□□□ -0.28
USP54-201ENST00000339859 ANKLE2Q86XL3 938 aa13.31□□□□□ -0.28
USP54-201ENST00000339859 SLC52A1Q9NWF4 448 aa13.31□□□□□ -0.28
USP54-201ENST00000339859 PPP6R1Q9UPN7 881 aa13.31□□□□□ -0.28
USP54-201ENST00000339859 HFM1A2PYH4 1435 aa13.3□□□□□ -0.28
USP54-201ENST00000339859 PTPN23Q9H3S7 1636 aa13.3□□□□□ -0.28
USP54-201ENST00000339859 NUTM2FA1L443 756 aa13.29□□□□□ -0.28
USP54-201ENST00000339859 ITSN2Q9NZM3 1697 aa13.29□□□□□ -0.28
USP54-201ENST00000339859 AMPHP49418 695 aa13.28□□□□□ -0.28
USP54-201ENST00000339859 TARBP1Q13395 1621 aaKnown RBP13.28□□□□□ -0.28
USP54-201ENST00000339859 NEUROD2Q15784 382 aa13.28□□□□□ -0.28
USP54-201ENST00000339859 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP54-201ENST00000339859 MINK1Q8N4C8 1332 aaPredicted RBP13.27□□□□□ -0.28
USP54-201ENST00000339859 PSME1Q06323 249 aa13.27□□□□□ -0.28
USP54-201ENST00000339859 ABCC2Q92887 1545 aa13.27□□□□□ -0.28
USP54-201ENST00000339859 ROCK1Q13464 1354 aa13.27□□□□□ -0.29
USP54-201ENST00000339859 CEP170Q5SW79 1584 aa13.27□□□□□ -0.29
USP54-201ENST00000339859 RALBP1Q15311 655 aa13.26□□□□□ -0.29
USP54-201ENST00000339859 EVA1CP58658 441 aa13.26□□□□□ -0.29
USP54-201ENST00000339859 ATP10BO94823 1461 aa13.26□□□□□ -0.29
USP54-201ENST00000339859 PROSER2Q86WR7 435 aaPredicted RBP13.26□□□□□ -0.29
USP54-201ENST00000339859 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP54-201ENST00000339859 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
USP54-201ENST00000339859 COG3Q96JB2 828 aa13.25□□□□□ -0.29
USP54-201ENST00000339859 PLCH2O75038 1416 aa13.25□□□□□ -0.29
USP54-201ENST00000339859 RPGRIP1LQ68CZ1 1315 aa13.25□□□□□ -0.29
USP54-201ENST00000339859 KIAA1107Q9UPP5 1409 aa13.23□□□□□ -0.29
USP54-201ENST00000339859 CHMP4BQ9H444 224 aaKnown RBP13.23□□□□□ -0.29
USP54-201ENST00000339859 CENPJQ9HC77 1338 aaPredicted RBP13.22□□□□□ -0.29
USP54-201ENST00000339859 CHMP4AQ9BY43 222 aa13.22□□□□□ -0.29
USP54-201ENST00000339859 FTSJ3Q8IY81 847 aaKnown RBP13.21□□□□□ -0.29
USP54-201ENST00000339859 DMRT2Q9Y5R5 561 aa13.21□□□□□ -0.29
USP54-201ENST00000339859 ZNF518AQ6AHZ1 1483 aa13.21□□□□□ -0.29
USP54-201ENST00000339859 CGNL1Q0VF96 1302 aa13.21□□□□□ -0.29
USP54-201ENST00000339859 MIER1Q8N108 512 aa13.21□□□□□ -0.29
USP54-201ENST00000339859 NUP153P49790 1475 aaKnown RBP13.21□□□□□ -0.29
USP54-201ENST00000339859 MS4A1P11836 297 aa13.2□□□□□ -0.3
USP54-201ENST00000339859 USP47Q96K76 1375 aa13.2□□□□□ -0.3
USP54-201ENST00000339859 ERBINQ96RT1 1412 aa13.19□□□□□ -0.3
USP54-201ENST00000339859 GPRASP1Q5JY77 1395 aa13.19□□□□□ -0.3
USP54-201ENST00000339859 U2AF1L5P0DN76 240 aaPredicted RBP13.19□□□□□ -0.3
USP54-201ENST00000339859 U2AF1Q01081 240 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP54-201ENST00000339859 UPF2Q9HAU5 1272 aaKnown RBP13.19□□□□□ -0.3
USP54-201ENST00000339859 CHD1O14646 1710 aa13.19□□□□□ -0.3
USP54-201ENST00000339859 ST20-MTHFSA0A0A6YYL1 179 aa13.18□□□□□ -0.3
USP54-201ENST00000339859 ABCC5O15440 1437 aa13.18□□□□□ -0.3
USP54-201ENST00000339859 LTV1Q96GA3 475 aaPredicted RBP13.16□□□□□ -0.3
USP54-201ENST00000339859 DHX29Q7Z478 1369 aaKnown RBP13.16□□□□□ -0.3
USP54-201ENST00000339859 LMOD3Q0VAK6 560 aa13.16□□□□□ -0.3
USP54-201ENST00000339859 GPATCH8Q9UKJ3 1502 aaKnown RBP13.16□□□□□ -0.3
USP54-201ENST00000339859 CFAP74Q9C0B2 1584 aa13.16□□□□□ -0.3
USP54-201ENST00000339859 ANKRD30BQ9BXX2 1392 aa13.15□□□□□ -0.3
USP54-201ENST00000339859 FKBP8Q14318 412 aa13.15□□□□□ -0.31
USP54-201ENST00000339859 DISP1Q96F81 1524 aa13.14□□□□□ -0.31
USP54-201ENST00000339859 ESCO1Q5FWF5 840 aa13.14□□□□□ -0.31
USP54-201ENST00000339859 CCDC136Q96JN2 1154 aa13.14□□□□□ -0.31
USP54-201ENST00000339859 ABCC10Q5T3U5 1492 aa13.13□□□□□ -0.31
USP54-201ENST00000339859 GTF3C3Q9Y5Q9 886 aa13.13□□□□□ -0.31
USP54-201ENST00000339859 DUOX2Q9NRD8 1548 aa13.13□□□□□ -0.31
USP54-201ENST00000339859 FAM135AQ9P2D6 1515 aa13.13□□□□□ -0.31
USP54-201ENST00000339859 C1orf141Q5JVX7 400 aa13.13□□□□□ -0.31
USP54-201ENST00000339859 CCER2I3L3R5 266 aa13.12□□□□□ -0.31
USP54-201ENST00000339859 PANK3Q9H999 370 aa13.12□□□□□ -0.31
USP54-201ENST00000339859 TMEM132EQ6IEE7 984 aa13.12□□□□□ -0.31
USP54-201ENST00000339859 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
USP54-201ENST00000339859 TMX4Q9H1E5 349 aaPredicted RBP13.12□□□□□ -0.31
USP54-201ENST00000339859 A2MP01023 1474 aa13.11□□□□□ -0.31
USP54-201ENST00000339859 TNRQ92752 1358 aa13.11□□□□□ -0.31
USP54-201ENST00000339859 KDM5BQ9UGL1 1544 aa13.1□□□□□ -0.31
USP54-201ENST00000339859 PRAM1Q96QH2 718 aa13.09□□□□□ -0.31
USP54-201ENST00000339859 CFAP70Q5T0N1 1121 aa13.09□□□□□ -0.31
USP54-201ENST00000339859 CFAP43Q8NDM7 1665 aa13.09□□□□□ -0.31
USP54-201ENST00000339859 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
USP54-201ENST00000339859 PHF23Q9BUL5 403 aaPredicted RBP13.09□□□□□ -0.31
USP54-201ENST00000339859 GOLGA2Q08379 1002 aa13.08□□□□□ -0.32
USP54-201ENST00000339859 EIF5BO60841 1220 aaKnown RBP13.08□□□□□ -0.32
USP54-201ENST00000339859 CABP2Q9NPB3 220 aa13.07□□□□□ -0.32
USP54-201ENST00000339859 UHRF1BP1LA0JNW5 1464 aa13.07□□□□□ -0.32
USP54-201ENST00000339859 ZNF330Q9Y3S2 320 aaPredicted RBP13.07□□□□□ -0.32
USP54-201ENST00000339859 FRAT1Q92837 279 aaPredicted RBP13.07□□□□□ -0.32
USP54-201ENST00000339859 SLC26A8Q96RN1 970 aa13.07□□□□□ -0.32
USP54-201ENST00000339859 PIP4K2BP78356 416 aa13.07□□□□□ -0.32
USP54-201ENST00000339859 CEBPAP49715 358 aaPredicted RBP13.06□□□□□ -0.32
USP54-201ENST00000339859 NLRP13Q86W25 1043 aa13.06□□□□□ -0.32
USP54-201ENST00000339859 RTL5Q5HYW3 569 aaPredicted RBP13.06□□□□□ -0.32
USP54-201ENST00000339859 CASC1Q6TDU7 716 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms