RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 CARMIL2Q6F5E8 1435 aa16.67■□□□□ 0.26
COL2A1-201ENST00000337299 CHMP5Q9NZZ3 219 aa16.67■□□□□ 0.26
COL2A1-201ENST00000337299 GGT6Q6P531 493 aa16.66■□□□□ 0.26
COL2A1-201ENST00000337299 USP47Q96K76 1375 aa16.66■□□□□ 0.26
COL2A1-201ENST00000337299 PLEKHG5O94827 1062 aa16.66■□□□□ 0.26
COL2A1-201ENST00000337299 RRBP1Q9P2E9 1410 aaKnown RBP16.66■□□□□ 0.26
COL2A1-201ENST00000337299 ITPRIPQ8IWB1 547 aa16.66■□□□□ 0.26
COL2A1-201ENST00000337299 SMG6Q86US8 1419 aaKnown RBP16.65■□□□□ 0.26
COL2A1-201ENST00000337299 ZNF644Q9H582 1327 aaPredicted RBP16.65■□□□□ 0.26
COL2A1-201ENST00000337299 PMFBP1Q8TBY8 1022 aa16.65■□□□□ 0.26
COL2A1-201ENST00000337299 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
COL2A1-201ENST00000337299 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
COL2A1-201ENST00000337299 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
COL2A1-201ENST00000337299 RRP7AQ9Y3A4 280 aaKnown RBP16.65■□□□□ 0.26
COL2A1-201ENST00000337299 ROCK2O75116 1388 aaKnown RBP16.64■□□□□ 0.25
COL2A1-201ENST00000337299 MAPK8IP3Q9UPT6 1336 aa16.64■□□□□ 0.25
COL2A1-201ENST00000337299 PNISRQ8TF01 805 aaKnown RBP16.64■□□□□ 0.25
COL2A1-201ENST00000337299 ESPNB1AK53 854 aa16.64■□□□□ 0.25
COL2A1-201ENST00000337299 MLECQ14165 292 aa16.64■□□□□ 0.25
COL2A1-201ENST00000337299 CFAP53Q96M91 514 aa16.64■□□□□ 0.25
COL2A1-201ENST00000337299 FOXD4L6Q3SYB3 417 aaPredicted RBP16.63■□□□□ 0.25
COL2A1-201ENST00000337299 FOXD4L3Q6VB84 417 aaPredicted RBP16.63■□□□□ 0.25
COL2A1-201ENST00000337299 PANK3Q9H999 370 aa16.63■□□□□ 0.25
COL2A1-201ENST00000337299 NUP155O75694 1391 aa16.63■□□□□ 0.25
COL2A1-201ENST00000337299 CDCA8Q53HL2 280 aa16.62■□□□□ 0.25
COL2A1-201ENST00000337299 KIAA1211Q6ZU35 1233 aa16.62■□□□□ 0.25
COL2A1-201ENST00000337299 APAF1O14727 1248 aa16.61■□□□□ 0.25
COL2A1-201ENST00000337299 ARAP1Q96P48 1450 aa16.61■□□□□ 0.25
COL2A1-201ENST00000337299 NBPF8Q3BBV2 869 aa16.6■□□□□ 0.25
COL2A1-201ENST00000337299 CASC1Q6TDU7 716 aa16.6■□□□□ 0.25
COL2A1-201ENST00000337299 PANK1Q8TE04 598 aa16.6■□□□□ 0.25
COL2A1-201ENST00000337299 NOL8Q76FK4 1167 aaKnown RBP16.59■□□□□ 0.25
COL2A1-201ENST00000337299 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.59■□□□□ 0.25
COL2A1-201ENST00000337299 C20orf194Q5TEA3 1177 aa16.58■□□□□ 0.25
COL2A1-201ENST00000337299 DRC7Q8IY82 874 aa16.58■□□□□ 0.25
COL2A1-201ENST00000337299 NASPP49321 788 aaPredicted RBP16.57■□□□□ 0.24
COL2A1-201ENST00000337299 EFCAB2Q5VUJ9 269 aa16.57■□□□□ 0.24
COL2A1-201ENST00000337299 TPM2P07951 284 aa16.57■□□□□ 0.24
COL2A1-201ENST00000337299 PTMSP20962 102 aa16.57■□□□□ 0.24
COL2A1-201ENST00000337299 GRPEL1Q9HAV7 217 aa16.56■□□□□ 0.24
COL2A1-201ENST00000337299 SAFB2Q14151 953 aaKnown RBP eCLIP16.56■□□□□ 0.24
COL2A1-201ENST00000337299 PRDM10Q9NQV6 1147 aa16.56■□□□□ 0.24
COL2A1-201ENST00000337299 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
COL2A1-201ENST00000337299 UACAQ9BZF9 1416 aa16.56■□□□□ 0.24
COL2A1-201ENST00000337299 SMC4Q9NTJ3 1288 aa16.55■□□□□ 0.24
COL2A1-201ENST00000337299 CUX1P39880 1505 aa16.55■□□□□ 0.24
COL2A1-201ENST00000337299 MPNDQ8N594 471 aa16.55■□□□□ 0.24
COL2A1-201ENST00000337299 PANK2Q9BZ23 570 aa16.55■□□□□ 0.24
COL2A1-201ENST00000337299 CC2D2AQ9P2K1 1620 aa16.54■□□□□ 0.24
COL2A1-201ENST00000337299 MCM4P33991 863 aa16.54■□□□□ 0.24
COL2A1-201ENST00000337299 BCL11BQ9C0K0 894 aaPredicted RBP16.54■□□□□ 0.24
COL2A1-201ENST00000337299 CGNL1Q0VF96 1302 aa16.54■□□□□ 0.24
COL2A1-201ENST00000337299 SKOR2Q2VWA4 1001 aaPredicted RBP16.54■□□□□ 0.24
COL2A1-201ENST00000337299 ZNF771Q7L3S4 317 aaPredicted RBP16.53■□□□□ 0.24
COL2A1-201ENST00000337299 WASHC2CQ9Y4E1 1318 aa16.53■□□□□ 0.24
COL2A1-201ENST00000337299 KIF3BO15066 747 aa16.53■□□□□ 0.24
COL2A1-201ENST00000337299 MORC1Q86VD1 984 aa16.53■□□□□ 0.24
COL2A1-201ENST00000337299 RNF214Q8ND24 703 aa16.53■□□□□ 0.24
COL2A1-201ENST00000337299 ADAMTS8Q9UP79 889 aa16.53■□□□□ 0.24
COL2A1-201ENST00000337299 U2AF1L5P0DN76 240 aaPredicted RBP16.52■□□□□ 0.23
COL2A1-201ENST00000337299 U2AF1Q01081 240 aaKnown RBP eCLIP16.52■□□□□ 0.23
COL2A1-201ENST00000337299 RRAGDQ9NQL2 400 aaPredicted RBP16.51■□□□□ 0.23
COL2A1-201ENST00000337299 PRXQ9BXM0 1461 aa16.51■□□□□ 0.23
COL2A1-201ENST00000337299 BCAR3O75815 825 aa16.5■□□□□ 0.23
COL2A1-201ENST00000337299 TNNT3P45378 269 aaPredicted RBP16.5■□□□□ 0.23
COL2A1-201ENST00000337299 PTPRGP23470 1445 aa16.5■□□□□ 0.23
COL2A1-201ENST00000337299 MAPK8IP2Q13387 824 aaPredicted RBP16.5■□□□□ 0.23
COL2A1-201ENST00000337299 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
COL2A1-201ENST00000337299 MCTP1Q6DN14 999 aa16.49■□□□□ 0.23
COL2A1-201ENST00000337299 ZHX1Q9UKY1 873 aaPredicted RBP16.48■□□□□ 0.23
COL2A1-201ENST00000337299 NUTM2DQ5VT03 806 aaPredicted RBP16.48■□□□□ 0.23
COL2A1-201ENST00000337299 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
COL2A1-201ENST00000337299 TAOK2Q9UL54 1235 aa16.47■□□□□ 0.23
COL2A1-201ENST00000337299 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
COL2A1-201ENST00000337299 CAVIN1Q6NZI2 390 aaKnown RBP16.47■□□□□ 0.23
COL2A1-201ENST00000337299 POLA1P09884 1462 aaPredicted RBP16.47■□□□□ 0.23
COL2A1-201ENST00000337299 XRCC6P12956 609 aaKnown RBP eCLIP16.46■□□□□ 0.23
COL2A1-201ENST00000337299 BRD4O60885 1362 aaPredicted RBP16.46■□□□□ 0.23
COL2A1-201ENST00000337299 GOLGA6L4A6NEF3 574 aa16.46■□□□□ 0.23
COL2A1-201ENST00000337299 E9PSI1 815 aa16.46■□□□□ 0.23
COL2A1-201ENST00000337299 MAP7D2Q96T17 732 aa16.46■□□□□ 0.23
COL2A1-201ENST00000337299 ANKRD45Q5TZF3 282 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 FGD6Q6ZV73 1430 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 TRHP20396 242 aaPredicted RBP16.45■□□□□ 0.22
COL2A1-201ENST00000337299 LNPKQ9C0E8 428 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 STK26Q9P289 416 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 UQCRHLA0A096LP55 91 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 UQCRHP07919 91 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 PDZRN3Q9UPQ7 1066 aa16.45■□□□□ 0.22
COL2A1-201ENST00000337299 SYAP1Q96A49 352 aaPredicted RBP16.44■□□□□ 0.22
COL2A1-201ENST00000337299 TOPBP1Q92547 1522 aa16.43■□□□□ 0.22
COL2A1-201ENST00000337299 ZRSR1Q15695 479 aaKnown RBP16.43■□□□□ 0.22
COL2A1-201ENST00000337299 SPAG9O60271 1321 aaKnown RBP16.43■□□□□ 0.22
COL2A1-201ENST00000337299 CSPP1Q1MSJ5 1256 aa16.42■□□□□ 0.22
COL2A1-201ENST00000337299 PDCL3Q9H2J4 239 aa16.42■□□□□ 0.22
COL2A1-201ENST00000337299 C14orf37Q86TY3 774 aa16.42■□□□□ 0.22
COL2A1-201ENST00000337299 IPO8O15397 1037 aaKnown RBP16.42■□□□□ 0.22
COL2A1-201ENST00000337299 TOP2BQ02880 1626 aa16.41■□□□□ 0.22
COL2A1-201ENST00000337299 CLCN1P35523 988 aa16.41■□□□□ 0.22
COL2A1-201ENST00000337299 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms