RNA–Protein interactions for RNA: ENST00000334944.9

SF1-202, Transcript of splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene SF1, Length 3,094 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-202ENST00000334944 MYT1LQ9UL68 1186 aa18.89■□□□□ 0.62
SF1-202ENST00000334944 SHANK2Q9UPX8 1470 aa18.89■□□□□ 0.61
SF1-202ENST00000334944 BCORL1Q5H9F3 1711 aa18.87■□□□□ 0.61
SF1-202ENST00000334944 NOP58Q9Y2X3 529 aaKnown RBP18.87■□□□□ 0.61
SF1-202ENST00000334944 B4GALNT3Q6L9W6 998 aa18.86■□□□□ 0.61
SF1-202ENST00000334944 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.86■□□□□ 0.616e-7■■■□□ 15.3
SF1-202ENST00000334944 NBPF1Q3BBV0 1214 aa18.85■□□□□ 0.61
SF1-202ENST00000334944 PREX2Q70Z35 1606 aa18.83■□□□□ 0.61
SF1-202ENST00000334944 PLEKHH2Q8IVE3 1493 aa18.83■□□□□ 0.6
SF1-202ENST00000334944 FAM135AQ9P2D6 1515 aa18.82■□□□□ 0.6
SF1-202ENST00000334944 ROCK2O75116 1388 aaKnown RBP18.81■□□□□ 0.6
SF1-202ENST00000334944 DHX29Q7Z478 1369 aaKnown RBP18.81■□□□□ 0.6
SF1-202ENST00000334944 ARHGEF5Q12774 1597 aa18.81■□□□□ 0.6
SF1-202ENST00000334944 AFAP1Q8N556 730 aa18.8■□□□□ 0.6
SF1-202ENST00000334944 ARHGEF12Q9NZN5 1544 aa18.8■□□□□ 0.6
SF1-202ENST00000334944 RSPH4AQ5TD94 716 aa18.8■□□□□ 0.6
SF1-202ENST00000334944 CCDC144AA2RUR9 1427 aa18.79■□□□□ 0.6
SF1-202ENST00000334944 ABCC2Q92887 1545 aa18.79■□□□□ 0.6
SF1-202ENST00000334944 KDM5CP41229 1560 aa18.78■□□□□ 0.6
SF1-202ENST00000334944 SHROOM2Q13796 1616 aa18.77■□□□□ 0.6
SF1-202ENST00000334944 RALGAPBQ86X10 1494 aa18.76■□□□□ 0.59
SF1-202ENST00000334944 RTL5Q5HYW3 569 aaPredicted RBP18.76■□□□□ 0.59
SF1-202ENST00000334944 EFCAB2Q5VUJ9 269 aa18.76■□□□□ 0.59
SF1-202ENST00000334944 UHRF1BP1Q6BDS2 1440 aa18.75■□□□□ 0.59
SF1-202ENST00000334944 PLA2R1Q13018 1463 aa18.75■□□□□ 0.59
SF1-202ENST00000334944 KDM5DQ9BY66 1539 aa18.75■□□□□ 0.59
SF1-202ENST00000334944 TRAPPC8Q9Y2L5 1435 aa18.74■□□□□ 0.59
SF1-202ENST00000334944 TMC1Q8TDI8 760 aa18.72■□□□□ 0.59
SF1-202ENST00000334944 ERICH6BQ5W0A0 696 aa18.72■□□□□ 0.59
SF1-202ENST00000334944 ZBED9Q6R2W3 1325 aa18.71■□□□□ 0.59
SF1-202ENST00000334944 MYO5CQ9NQX4 1742 aa18.71■□□□□ 0.59
SF1-202ENST00000334944 EIF5BO60841 1220 aaKnown RBP18.7■□□□□ 0.58
SF1-202ENST00000334944 POLR1AO95602 1720 aaPredicted RBP18.7■□□□□ 0.58
SF1-202ENST00000334944 PPP4R2Q9NY27 417 aa18.7■□□□□ 0.58
SF1-202ENST00000334944 PLCH2O75038 1416 aa18.69■□□□□ 0.58
SF1-202ENST00000334944 ZCCHC11Q5TAX3 1644 aaKnown RBP18.69■□□□□ 0.58
SF1-202ENST00000334944 SPAG9O60271 1321 aaKnown RBP18.69■□□□□ 0.58
SF1-202ENST00000334944 PRAG1Q86YV5 1406 aa18.68■□□□□ 0.58
SF1-202ENST00000334944 UBE2Q2Q8WVN8 375 aa18.67■□□□□ 0.58
SF1-202ENST00000334944 A2MP01023 1474 aa18.67■□□□□ 0.58
SF1-202ENST00000334944 CC2D1BQ5T0F9 858 aaKnown RBP18.65■□□□□ 0.58
SF1-202ENST00000334944 PNISRQ8TF01 805 aaKnown RBP18.65■□□□□ 0.58
SF1-202ENST00000334944 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
SF1-202ENST00000334944 ARID4BQ4LE39 1312 aaPredicted RBP18.62■□□□□ 0.57
SF1-202ENST00000334944 DISP3Q9P2K9 1392 aa18.62■□□□□ 0.57
SF1-202ENST00000334944 KIF3BO15066 747 aa18.61■□□□□ 0.57
SF1-202ENST00000334944 DUOX2Q9NRD8 1548 aa18.61■□□□□ 0.57
SF1-202ENST00000334944 UNC13BO14795 1591 aa18.61■□□□□ 0.57
SF1-202ENST00000334944 LAS1LQ9Y4W2 734 aaKnown RBP18.6■□□□□ 0.57
SF1-202ENST00000334944 MAST1Q9Y2H9 1570 aa18.6■□□□□ 0.57
SF1-202ENST00000334944 ZBTB47Q9UFB7 747 aaPredicted RBP18.6■□□□□ 0.57
SF1-202ENST00000334944 TESK2Q96S53 571 aa18.59■□□□□ 0.57
SF1-202ENST00000334944 ABCC1P33527 1531 aa18.58■□□□□ 0.57
SF1-202ENST00000334944 NPM2Q86SE8 214 aaKnown RBP18.58■□□□□ 0.57
SF1-202ENST00000334944 PANK3Q9H999 370 aa18.58■□□□□ 0.56
SF1-202ENST00000334944 PLXNC1O60486 1568 aa18.58■□□□□ 0.56
SF1-202ENST00000334944 ANP32AP39687 249 aaKnown RBP18.57■□□□□ 0.56
SF1-202ENST00000334944 TRPM1Q7Z4N2 1603 aa18.57■□□□□ 0.56
SF1-202ENST00000334944 SCAPERQ9BY12 1400 aa18.57■□□□□ 0.56
SF1-202ENST00000334944 MYBBP1AQ9BQG0 1328 aaKnown RBP18.56■□□□□ 0.56
SF1-202ENST00000334944 ERBINQ96RT1 1412 aa18.56■□□□□ 0.56
SF1-202ENST00000334944 IQGAP3Q86VI3 1631 aa18.56■□□□□ 0.56
SF1-202ENST00000334944 IPO9Q96P70 1041 aaKnown RBP18.55■□□□□ 0.56
SF1-202ENST00000334944 UHRF1BP1LA0JNW5 1464 aa18.54■□□□□ 0.56
SF1-202ENST00000334944 BRPF3Q9ULD4 1205 aa18.54■□□□□ 0.56
SF1-202ENST00000334944 PER1O15534 1290 aaPredicted RBP18.53■□□□□ 0.56
SF1-202ENST00000334944 NUDCQ9Y266 331 aa18.53■□□□□ 0.56
SF1-202ENST00000334944 FANCAO15360 1455 aa18.53■□□□□ 0.56
SF1-202ENST00000334944 RALBP1Q15311 655 aa18.53■□□□□ 0.56
SF1-202ENST00000334944 KTN1Q86UP2 1357 aaKnown RBP18.52■□□□□ 0.56
SF1-202ENST00000334944 WDR7Q9Y4E6 1490 aa18.51■□□□□ 0.55
SF1-202ENST00000334944 TMF1P82094 1093 aa18.51■□□□□ 0.55
SF1-202ENST00000334944 NEFMP07197 916 aa18.5■□□□□ 0.55
SF1-202ENST00000334944 SENP3Q9H4L4 574 aaPredicted RBP18.5■□□□□ 0.55
SF1-202ENST00000334944 GPRASP1Q5JY77 1395 aa18.5■□□□□ 0.55
SF1-202ENST00000334944 CHGAP10645 457 aaKnown RBP18.48■□□□□ 0.55
SF1-202ENST00000334944 NLRP13Q86W25 1043 aa18.48■□□□□ 0.55
SF1-202ENST00000334944 ZFYVE16Q7Z3T8 1539 aa18.48■□□□□ 0.55
SF1-202ENST00000334944 MAGI2Q86UL8 1455 aa18.48■□□□□ 0.55
SF1-202ENST00000334944 SMG6Q86US8 1419 aaKnown RBP18.48■□□□□ 0.55
SF1-202ENST00000334944 BRD4O60885 1362 aaPredicted RBP18.47■□□□□ 0.55
SF1-202ENST00000334944 ADGRL1O94910 1474 aa18.47■□□□□ 0.55
SF1-202ENST00000334944 ASXL2Q76L83 1435 aa18.47■□□□□ 0.55
SF1-202ENST00000334944 ATP10AO60312 1499 aa18.47■□□□□ 0.55
SF1-202ENST00000334944 E9PCH4 1651 aa18.47■□□□□ 0.55
SF1-202ENST00000334944 COL17A1Q9UMD9 1497 aaPredicted RBP18.46■□□□□ 0.55
SF1-202ENST00000334944 CDCA7LQ96GN5 454 aa18.46■□□□□ 0.54
SF1-202ENST00000334944 UGGT1Q9NYU2 1555 aa18.45■□□□□ 0.54
SF1-202ENST00000334944 PRDM15P57071 1507 aaPredicted RBP18.45■□□□□ 0.54
SF1-202ENST00000334944 PARD3Q8TEW0 1356 aa18.45■□□□□ 0.54
SF1-202ENST00000334944 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
SF1-202ENST00000334944 LRPPRCP42704 1394 aaKnown RBP18.44■□□□□ 0.54
SF1-202ENST00000334944 GGT6Q6P531 493 aa18.44■□□□□ 0.54
SF1-202ENST00000334944 NPM1P06748 294 aaKnown RBP eCLIP18.43■□□□□ 0.54
SF1-202ENST00000334944 ATP7AQ04656 1500 aa18.43■□□□□ 0.54
SF1-202ENST00000334944 KANK1Q14678 1352 aa18.42■□□□□ 0.54
SF1-202ENST00000334944 RTEL1-TNFRSF6BF6WH68 1400 aa18.41■□□□□ 0.54
SF1-202ENST00000334944 ADGRF5Q8IZF2 1346 aa18.41■□□□□ 0.54
SF1-202ENST00000334944 CLTCL1P53675 1640 aa18.4■□□□□ 0.54
SF1-202ENST00000334944 NUTM2DQ5VT03 806 aaPredicted RBP18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms