RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 ITPRIPQ8IWB1 547 aa6.77□□□□□ -1.32
PTPRB-202ENST00000334414 PES1O00541 588 aaKnown RBP6.77□□□□□ -1.33
PTPRB-202ENST00000334414 TXLNBQ8N3L3 684 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 DDX49Q9Y6V7 483 aaKnown RBP6.77□□□□□ -1.33
PTPRB-202ENST00000334414 CENPJQ9HC77 1338 aaPredicted RBP6.77□□□□□ -1.33
PTPRB-202ENST00000334414 WWC1Q8IX03 1113 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 MYBBP1AQ9BQG0 1328 aaKnown RBP6.77□□□□□ -1.33
PTPRB-202ENST00000334414 BECN2A8MW95 431 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 CFDP1Q9UEE9 299 aaPredicted RBP6.77□□□□□ -1.33
PTPRB-202ENST00000334414 CCDC18Q5T9S5 1454 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 CLSTN1O94985 981 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 NUCB2P80303 420 aa6.77□□□□□ -1.33
PTPRB-202ENST00000334414 NEXNQ0ZGT2 675 aa6.76□□□□□ -1.33
PTPRB-202ENST00000334414 RNF20Q5VTR2 975 aa6.76□□□□□ -1.33
PTPRB-202ENST00000334414 HDGFP51858 240 aaKnown RBP6.76□□□□□ -1.33
PTPRB-202ENST00000334414 TPRNQ4KMQ1 711 aa6.76□□□□□ -1.33
PTPRB-202ENST00000334414 PDCL2Q8N4E4 241 aa6.76□□□□□ -1.33
PTPRB-202ENST00000334414 MFAP1P55081 439 aaKnown RBP6.76□□□□□ -1.33
PTPRB-202ENST00000334414 PLEKHD1A6NEE1 506 aa6.76□□□□□ -1.33
PTPRB-202ENST00000334414 ANO8Q9HCE9 1232 aaPredicted RBP6.76□□□□□ -1.33
PTPRB-202ENST00000334414 SCAPERQ9BY12 1400 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 NLRP13Q86W25 1043 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 RRP7BPQ9NSQ0 103 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 CHMP5Q9NZZ3 219 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 H0YHG0 523 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 IQCEQ6IPM2 695 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 SMARCA2P51531 1590 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 RTF1Q92541 710 aaKnown RBP6.75□□□□□ -1.33
PTPRB-202ENST00000334414 MORC1Q86VD1 984 aa6.75□□□□□ -1.33
PTPRB-202ENST00000334414 PDIA4P13667 645 aaKnown RBP6.74□□□□□ -1.33
PTPRB-202ENST00000334414 PODXL2Q9NZ53 605 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 PDE4AP27815 886 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 FAM13BQ9NYF5 915 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 TPD52L1Q16890 204 aaPredicted RBP6.74□□□□□ -1.33
PTPRB-202ENST00000334414 CC2D1BQ5T0F9 858 aaKnown RBP6.74□□□□□ -1.33
PTPRB-202ENST00000334414 MNS1Q8NEH6 495 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 ARID3AQ99856 593 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 CCDC47Q96A33 483 aaKnown RBP6.74□□□□□ -1.33
PTPRB-202ENST00000334414 SPRYD3Q8NCJ5 442 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 FAM107BQ9H098 131 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 ERLIN1O75477 346 aa6.74□□□□□ -1.33
PTPRB-202ENST00000334414 ARID3CA6NKF2 412 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 H3BQV1 296 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 PIP4K2AP48426 406 aaPredicted RBP6.73□□□□□ -1.33
PTPRB-202ENST00000334414 IFFO2Q5TF58 517 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 EIF3JO75822 258 aaKnown RBP6.73□□□□□ -1.33
PTPRB-202ENST00000334414 MBD3O95983 291 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 RABEP1Q15276 862 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 CNTLNQ9NXG0 1405 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 E9PSI1 815 aa6.73□□□□□ -1.33
PTPRB-202ENST00000334414 HDGFL2Q7Z4V5 671 aaPredicted RBP6.73□□□□□ -1.33
PTPRB-202ENST00000334414 RUFY2Q8WXA3 655 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 STK31Q9BXU1 1019 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 KIAA0754O94854 1291 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 RRP1P56182 461 aaKnown RBP6.72□□□□□ -1.33
PTPRB-202ENST00000334414 RASSF8Q8NHQ8 419 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 POGKQ9P215 609 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 NASPP49321 788 aaPredicted RBP6.72□□□□□ -1.33
PTPRB-202ENST00000334414 HOMER1Q86YM7 354 aa6.72□□□□□ -1.33
PTPRB-202ENST00000334414 HSPA5P11021 654 aaKnown RBP6.71□□□□□ -1.33
PTPRB-202ENST00000334414 NEUROD2Q15784 382 aa6.71□□□□□ -1.33
PTPRB-202ENST00000334414 PLEKHH2Q8IVE3 1493 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 TOP2AP11388 1531 aaKnown RBP6.71□□□□□ -1.34
PTPRB-202ENST00000334414 DDX11Q96FC9 970 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 DDX19BQ9UMR2 479 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 SMC4Q9NTJ3 1288 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 U2SURPO15042 1029 aaKnown RBP6.71□□□□□ -1.34
PTPRB-202ENST00000334414 DEF6Q9H4E7 631 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 RAB3GAP2Q9H2M9 1393 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 KIF2AO00139 706 aaPredicted RBP6.71□□□□□ -1.34
PTPRB-202ENST00000334414 IL27Q8NEV9 243 aa6.71□□□□□ -1.34
PTPRB-202ENST00000334414 NEFHP12036 1026 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 IFT57Q9NWB7 429 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 GOLGA6L10A6NI86 522 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 SF3A1Q15459 793 aaKnown RBP6.7□□□□□ -1.34
PTPRB-202ENST00000334414 HIRIP3Q9BW71 556 aaPredicted RBP6.7□□□□□ -1.34
PTPRB-202ENST00000334414 MCM2P49736 904 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 SASS6Q6UVJ0 657 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 ANKRD18AQ8IVF6 992 aa6.7□□□□□ -1.34
PTPRB-202ENST00000334414 POLR3GO15318 223 aaPredicted RBP6.7□□□□□ -1.34
PTPRB-202ENST00000334414 CCDC144AA2RUR9 1427 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 TRIM6-TRIM34B2RNG4 842 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 ZKSCAN1P17029 563 aaPredicted RBP6.69□□□□□ -1.34
PTPRB-202ENST00000334414 MCM3P25205 808 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 STK11IPQ8N1F8 1099 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 C14orf37Q86TY3 774 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 CCAR2Q8N163 923 aaKnown RBP6.69□□□□□ -1.34
PTPRB-202ENST00000334414 SMARCE1Q969G3 411 aa6.69□□□□□ -1.34
PTPRB-202ENST00000334414 INTS3Q68E01 1043 aaKnown RBP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 PABPN1Q86U42 306 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 EIF4G1Q04637 1599 aaKnown RBP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 CPLX2Q6PUV4 134 aaKnown RBP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 TERF2IPQ9NYB0 399 aa6.68□□□□□ -1.34
PTPRB-202ENST00000334414 TRIM29Q14134 588 aa6.68□□□□□ -1.34
PTPRB-202ENST00000334414 FAM184AQ8NB25 1140 aa6.68□□□□□ -1.34
PTPRB-202ENST00000334414 CHMP7Q8WUX9 453 aaPredicted RBP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 NPHP1O15259 732 aa6.68□□□□□ -1.34
PTPRB-202ENST00000334414 LUC7LQ9NQ29 371 aaKnown RBP6.68□□□□□ -1.34
PTPRB-202ENST00000334414 ERLIN2O94905 339 aa6.68□□□□□ -1.34
PTPRB-202ENST00000334414 ZNF592Q92610 1267 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms