RNA–Protein interactions for RNA: ENST00000330394.2

EPHB3-201, Transcript of EPH receptor B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EPHB3, Length 4,236 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3-201ENST00000330394 PANK1Q8TE04 598 aa17.67■□□□□ 0.42
EPHB3-201ENST00000330394 DDX49Q9Y6V7 483 aaKnown RBP17.67■□□□□ 0.42
EPHB3-201ENST00000330394 POGKQ9P215 609 aa17.66■□□□□ 0.42
EPHB3-201ENST00000330394 NOL8Q76FK4 1167 aaKnown RBP17.66■□□□□ 0.42
EPHB3-201ENST00000330394 TAOK2Q9UL54 1235 aa17.66■□□□□ 0.42
EPHB3-201ENST00000330394 SRPK2P78362 688 aaKnown RBP17.65■□□□□ 0.42
EPHB3-201ENST00000330394 PRXQ9BXM0 1461 aa17.65■□□□□ 0.42
EPHB3-201ENST00000330394 IPO8O15397 1037 aaKnown RBP17.64■□□□□ 0.42
EPHB3-201ENST00000330394 ESF1Q9H501 851 aaKnown RBP17.64■□□□□ 0.42
EPHB3-201ENST00000330394 CGNL1Q0VF96 1302 aa17.64■□□□□ 0.41
EPHB3-201ENST00000330394 SOX12O15370 315 aa17.63■□□□□ 0.41
EPHB3-201ENST00000330394 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
EPHB3-201ENST00000330394 FOXD4L6Q3SYB3 417 aaPredicted RBP17.63■□□□□ 0.41
EPHB3-201ENST00000330394 FOXD4L3Q6VB84 417 aaPredicted RBP17.63■□□□□ 0.41
EPHB3-201ENST00000330394 STK26Q9P289 416 aa17.63■□□□□ 0.41
EPHB3-201ENST00000330394 DDX11L8A8MPP1 907 aa17.62■□□□□ 0.41
EPHB3-201ENST00000330394 CHMP4BQ9H444 224 aaKnown RBP17.62■□□□□ 0.41
EPHB3-201ENST00000330394 FANCD2Q9BXW9 1451 aa17.62■□□□□ 0.41
EPHB3-201ENST00000330394 ELL2O00472 640 aaPredicted RBP17.62■□□□□ 0.41
EPHB3-201ENST00000330394 FAM13BQ9NYF5 915 aa17.62■□□□□ 0.41
EPHB3-201ENST00000330394 E9PSI1 815 aa17.61■□□□□ 0.41
EPHB3-201ENST00000330394 CHAF1AQ13111 956 aaPredicted RBP17.61■□□□□ 0.41
EPHB3-201ENST00000330394 CHMP5Q9NZZ3 219 aa17.6■□□□□ 0.41
EPHB3-201ENST00000330394 KIAA2012Q0VF49 1180 aa17.6■□□□□ 0.41
EPHB3-201ENST00000330394 SMG6Q86US8 1419 aaKnown RBP17.6■□□□□ 0.41
EPHB3-201ENST00000330394 CDK11BP21127 795 aaKnown RBP17.59■□□□□ 0.41
EPHB3-201ENST00000330394 MYOM3Q5VTT5 1437 aa17.59■□□□□ 0.41
EPHB3-201ENST00000330394 ANKRD45Q5TZF3 282 aa17.57■□□□□ 0.4
EPHB3-201ENST00000330394 C14orf37Q86TY3 774 aa17.57■□□□□ 0.4
EPHB3-201ENST00000330394 DRC7Q8IY82 874 aa17.57■□□□□ 0.4
EPHB3-201ENST00000330394 KCNJ4P48050 445 aa17.57■□□□□ 0.4
EPHB3-201ENST00000330394 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
EPHB3-201ENST00000330394 GOLGA6L4A6NEF3 574 aa17.56■□□□□ 0.4
EPHB3-201ENST00000330394 BCAR3O75815 825 aa17.56■□□□□ 0.4
EPHB3-201ENST00000330394 ZRSR1Q15695 479 aaKnown RBP17.56■□□□□ 0.4
EPHB3-201ENST00000330394 FAM43AQ8N2R8 423 aa17.56■□□□□ 0.4
EPHB3-201ENST00000330394 C20orf194Q5TEA3 1177 aa17.55■□□□□ 0.4
EPHB3-201ENST00000330394 TRAK2O60296 914 aa17.55■□□□□ 0.4
EPHB3-201ENST00000330394 C22orf23Q9BZE7 217 aa17.55■□□□□ 0.4
EPHB3-201ENST00000330394 NUTM2DQ5VT03 806 aaPredicted RBP17.54■□□□□ 0.4
EPHB3-201ENST00000330394 TRAK1Q9UPV9 953 aa17.54■□□□□ 0.4
EPHB3-201ENST00000330394 PTMSP20962 102 aa17.54■□□□□ 0.4
EPHB3-201ENST00000330394 CUX1P39880 1505 aa17.54■□□□□ 0.4
EPHB3-201ENST00000330394 ZKSCAN2Q63HK3 967 aa17.54■□□□□ 0.4
EPHB3-201ENST00000330394 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
EPHB3-201ENST00000330394 LNPKQ9C0E8 428 aa17.53■□□□□ 0.4
EPHB3-201ENST00000330394 CCDC144AA2RUR9 1427 aa17.53■□□□□ 0.4
EPHB3-201ENST00000330394 OS9Q13438 667 aaPredicted RBP17.53■□□□□ 0.4
EPHB3-201ENST00000330394 GGT6Q6P531 493 aa17.52■□□□□ 0.4
EPHB3-201ENST00000330394 ERCC6Q03468 1493 aa17.52■□□□□ 0.39
EPHB3-201ENST00000330394 MCCP23508 829 aa17.51■□□□□ 0.39
EPHB3-201ENST00000330394 PKNOX2Q96KN3 472 aa17.51■□□□□ 0.39
EPHB3-201ENST00000330394 NCOA2Q15596 1464 aa17.51■□□□□ 0.39
EPHB3-201ENST00000330394 CFTRP13569 1480 aa17.5■□□□□ 0.39
EPHB3-201ENST00000330394 JPH4Q96JJ6 628 aa17.5■□□□□ 0.39
EPHB3-201ENST00000330394 NAP1L2Q9ULW6 460 aaPredicted RBP17.5■□□□□ 0.39
EPHB3-201ENST00000330394 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
EPHB3-201ENST00000330394 FGD1P98174 961 aa17.5■□□□□ 0.39
EPHB3-201ENST00000330394 MRE11P49959 708 aa17.49■□□□□ 0.39
EPHB3-201ENST00000330394 ERICH3Q5RHP9 1530 aa17.49■□□□□ 0.39
EPHB3-201ENST00000330394 DZIP1LQ8IYY4 767 aaKnown RBP17.48■□□□□ 0.39
EPHB3-201ENST00000330394 SKOR2Q2VWA4 1001 aaPredicted RBP17.47■□□□□ 0.39
EPHB3-201ENST00000330394 HFM1A2PYH4 1435 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 TRIM6-TRIM34B2RNG4 842 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 PDZRN3Q9UPQ7 1066 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 KIF3BO15066 747 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 SLC4A10Q6U841 1118 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 TOP2BQ02880 1626 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 R3HCC1Q9Y3T6 440 aaKnown RBP17.46■□□□□ 0.39
EPHB3-201ENST00000330394 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
EPHB3-201ENST00000330394 RBM10P98175 930 aaKnown RBP17.45■□□□□ 0.38
EPHB3-201ENST00000330394 SYAP1Q96A49 352 aaPredicted RBP17.45■□□□□ 0.38
EPHB3-201ENST00000330394 ST18O60284 1047 aa17.44■□□□□ 0.38
EPHB3-201ENST00000330394 NESP48681 1621 aa17.43■□□□□ 0.38
EPHB3-201ENST00000330394 CASKIN1Q8WXD9 1431 aa17.43■□□□□ 0.38
EPHB3-201ENST00000330394 PPP2R1AP30153 589 aa17.43■□□□□ 0.38
EPHB3-201ENST00000330394 MCTP1Q6DN14 999 aa17.43■□□□□ 0.38
EPHB3-201ENST00000330394 NAIPQ13075 1403 aa17.42■□□□□ 0.38
EPHB3-201ENST00000330394 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
EPHB3-201ENST00000330394 RNF214Q8ND24 703 aa17.42■□□□□ 0.38
EPHB3-201ENST00000330394 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.38
EPHB3-201ENST00000330394 NASPP49321 788 aaPredicted RBP17.42■□□□□ 0.38
EPHB3-201ENST00000330394 KANK1Q14678 1352 aa17.42■□□□□ 0.38
EPHB3-201ENST00000330394 CFAP44Q96MT7 982 aa17.41■□□□□ 0.38
EPHB3-201ENST00000330394 TIAM1Q13009 1591 aa17.41■□□□□ 0.38
EPHB3-201ENST00000330394 KIAA1211Q6ZU35 1233 aa17.4■□□□□ 0.38
EPHB3-201ENST00000330394 DDX19BQ9UMR2 479 aa17.4■□□□□ 0.38
EPHB3-201ENST00000330394 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.38
EPHB3-201ENST00000330394 MCM4P33991 863 aa17.39■□□□□ 0.37
EPHB3-201ENST00000330394 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.39■□□□□ 0.37
EPHB3-201ENST00000330394 EIF3AQ14152 1382 aaKnown RBP17.39■□□□□ 0.37
EPHB3-201ENST00000330394 TCP11L2Q8N4U5 519 aa17.39■□□□□ 0.37
EPHB3-201ENST00000330394 MPNDQ8N594 471 aa17.38■□□□□ 0.37
EPHB3-201ENST00000330394 HDGFL2Q7Z4V5 671 aaPredicted RBP17.38■□□□□ 0.37
EPHB3-201ENST00000330394 ESPNB1AK53 854 aa17.37■□□□□ 0.37
EPHB3-201ENST00000330394 CARMIL2Q6F5E8 1435 aa17.37■□□□□ 0.37
EPHB3-201ENST00000330394 EFCAB2Q5VUJ9 269 aa17.36■□□□□ 0.37
EPHB3-201ENST00000330394 CAVIN1Q6NZI2 390 aaKnown RBP17.36■□□□□ 0.37
EPHB3-201ENST00000330394 MAPKBP1O60336 1514 aa17.36■□□□□ 0.37
EPHB3-201ENST00000330394 BCL11BQ9C0K0 894 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms