RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 PDS5BQ9NTI5 1447 aa11.98□□□□□ -0.49
COL12A1-201ENST00000322507 U2SURPO15042 1029 aaKnown RBP11.97□□□□□ -0.49
COL12A1-201ENST00000322507 ANO8Q9HCE9 1232 aaPredicted RBP11.97□□□□□ -0.49
COL12A1-201ENST00000322507 TOP2AP11388 1531 aaKnown RBP11.96□□□□□ -0.49
COL12A1-201ENST00000322507 ATP6V1DQ9Y5K8 247 aa11.96□□□□□ -0.5
COL12A1-201ENST00000322507 PDIA4P13667 645 aaKnown RBP11.96□□□□□ -0.5
COL12A1-201ENST00000322507 HMGN5P82970 282 aaKnown RBP11.96□□□□□ -0.5
COL12A1-201ENST00000322507 TMX4Q9H1E5 349 aaPredicted RBP11.96□□□□□ -0.5
COL12A1-201ENST00000322507 DDX11L8A8MPP1 907 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 GOLGA6L7A0A1B0GV03 622 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 HIRIP3Q9BW71 556 aaPredicted RBP11.95□□□□□ -0.5
COL12A1-201ENST00000322507 ABCC8Q09428 1581 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 DCAF11Q8TEB1 546 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 HSP90AB3PQ58FF7 597 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 UBE2Q2Q8WVN8 375 aa11.95□□□□□ -0.5
COL12A1-201ENST00000322507 NAP1L2Q9ULW6 460 aaPredicted RBP11.94□□□□□ -0.5
COL12A1-201ENST00000322507 HSP90B2PQ58FF3 399 aa11.94□□□□□ -0.5
COL12A1-201ENST00000322507 PAIP2Q9BPZ3 127 aaKnown RBP11.93□□□□□ -0.5
COL12A1-201ENST00000322507 GOLGA6L10A6NI86 522 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 SRPK2P78362 688 aaKnown RBP11.93□□□□□ -0.5
COL12A1-201ENST00000322507 LEKR1Q6ZMV7 388 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 TERF2IPQ9NYB0 399 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 LRRFIP1Q32MZ4 808 aaKnown RBP11.93□□□□□ -0.5
COL12A1-201ENST00000322507 RCAN3Q9UKA8 241 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 ST18O60284 1047 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 NEUROD2Q15784 382 aa11.93□□□□□ -0.5
COL12A1-201ENST00000322507 GIMAP7Q8NHV1 300 aa11.92□□□□□ -0.5
COL12A1-201ENST00000322507 PSMD1Q99460 953 aa11.92□□□□□ -0.5
COL12A1-201ENST00000322507 STK31Q9BXU1 1019 aa11.92□□□□□ -0.5
COL12A1-201ENST00000322507 MNS1Q8NEH6 495 aa11.92□□□□□ -0.5
COL12A1-201ENST00000322507 IRX3P78415 501 aaPredicted RBP11.92□□□□□ -0.5
COL12A1-201ENST00000322507 SKOR2Q2VWA4 1001 aaPredicted RBP11.91□□□□□ -0.5
COL12A1-201ENST00000322507 CUX1P39880 1505 aa11.91□□□□□ -0.5
COL12A1-201ENST00000322507 TMCO5BA8MYB1 307 aa11.91□□□□□ -0.5
COL12A1-201ENST00000322507 AAMPQ13685 434 aa11.91□□□□□ -0.5
COL12A1-201ENST00000322507 RUFY1Q96T51 708 aa11.91□□□□□ -0.5
COL12A1-201ENST00000322507 FAM13BQ9NYF5 915 aa11.9□□□□□ -0.5
COL12A1-201ENST00000322507 KIF15Q9NS87 1388 aa11.89□□□□□ -0.51
COL12A1-201ENST00000322507 NCBP3Q53F19 620 aaKnown RBP11.89□□□□□ -0.51
COL12A1-201ENST00000322507 NLRP13Q86W25 1043 aa11.89□□□□□ -0.51
COL12A1-201ENST00000322507 FYB1O15117 783 aa11.89□□□□□ -0.51
COL12A1-201ENST00000322507 ERCC4Q92889 916 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-201ENST00000322507 RBM19Q9Y4C8 960 aaKnown RBP11.88□□□□□ -0.51
COL12A1-201ENST00000322507 ROCK1Q13464 1354 aa11.88□□□□□ -0.51
COL12A1-201ENST00000322507 KIF16BQ96L93 1317 aa11.87□□□□□ -0.51
COL12A1-201ENST00000322507 KIAA0754O94854 1291 aa11.87□□□□□ -0.51
COL12A1-201ENST00000322507 WWC1Q8IX03 1113 aa11.87□□□□□ -0.51
COL12A1-201ENST00000322507 B4GALNT3Q6L9W6 998 aa11.87□□□□□ -0.51
COL12A1-201ENST00000322507 RBM28Q9NW13 759 aaKnown RBP11.87□□□□□ -0.51
COL12A1-201ENST00000322507 DIAPH3Q9NSV4 1193 aa11.86□□□□□ -0.51
COL12A1-201ENST00000322507 FAM43AQ8N2R8 423 aa11.86□□□□□ -0.51
COL12A1-201ENST00000322507 SPATA24Q86W54 205 aa11.86□□□□□ -0.51
COL12A1-201ENST00000322507 DDX11Q96FC9 970 aa11.86□□□□□ -0.51
COL12A1-201ENST00000322507 IPO9Q96P70 1041 aaKnown RBP11.86□□□□□ -0.51
COL12A1-201ENST00000322507 CLGNO14967 610 aa11.85□□□□□ -0.51
COL12A1-201ENST00000322507 GSE1Q14687 1217 aa11.85□□□□□ -0.51
COL12A1-201ENST00000322507 CEP89Q96ST8 783 aa11.85□□□□□ -0.51
COL12A1-201ENST00000322507 TPM1P09493 284 aa11.85□□□□□ -0.51
COL12A1-201ENST00000322507 ITPRIPQ8IWB1 547 aa11.85□□□□□ -0.51
COL12A1-201ENST00000322507 GOLGA6L19H0YKK7 550 aa11.84□□□□□ -0.51
COL12A1-201ENST00000322507 TSR1Q2NL82 804 aaKnown RBP11.84□□□□□ -0.51
COL12A1-201ENST00000322507 CLSTN1O94985 981 aa11.84□□□□□ -0.51
COL12A1-201ENST00000322507 STAC3Q96MF2 364 aa11.84□□□□□ -0.51
COL12A1-201ENST00000322507 BRD2P25440 801 aaKnown RBP11.83□□□□□ -0.51
COL12A1-201ENST00000322507 FAM107BQ9H098 131 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 NUP155O75694 1391 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 RAB3GAP2Q9H2M9 1393 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 KAT6BQ8WYB5 2073 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 EFCAB2Q5VUJ9 269 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 GOLGA6L10A0A0M3HER8 536 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 RAPGEF2Q9Y4G8 1499 aa11.83□□□□□ -0.52
COL12A1-201ENST00000322507 CENPJQ9HC77 1338 aaPredicted RBP11.82□□□□□ -0.52
COL12A1-201ENST00000322507 SWAP70Q9UH65 585 aa11.82□□□□□ -0.52
COL12A1-201ENST00000322507 CENPQQ7L2Z9 268 aaPredicted RBP11.82□□□□□ -0.52
COL12A1-201ENST00000322507 MYO6Q9UM54 1294 aa11.82□□□□□ -0.52
COL12A1-201ENST00000322507 U2AF1L5P0DN76 240 aaPredicted RBP11.82□□□□□ -0.52
COL12A1-201ENST00000322507 U2AF1Q01081 240 aaKnown RBP eCLIP11.82□□□□□ -0.52
COL12A1-201ENST00000322507 HOOK1Q9UJC3 728 aaKnown RBP11.81□□□□□ -0.52
COL12A1-201ENST00000322507 GORABQ5T7V8 394 aa11.81□□□□□ -0.52
COL12A1-201ENST00000322507 PLCD4Q9BRC7 762 aa11.81□□□□□ -0.52
COL12A1-201ENST00000322507 PRM3Q9NNZ6 103 aa11.81□□□□□ -0.52
COL12A1-201ENST00000322507 BCCIPQ9P287 314 aaKnown RBP eCLIP11.81□□□□□ -0.52
COL12A1-201ENST00000322507 CCDC144AA2RUR9 1427 aa11.81□□□□□ -0.52
COL12A1-201ENST00000322507 SMARCA4P51532 1647 aa11.81□□□□□ -0.52
COL12A1-201ENST00000322507 SUDS3Q9H7L9 328 aaPredicted RBP11.8□□□□□ -0.52
COL12A1-201ENST00000322507 CCDC88BA6NC98 1476 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 CGNL1Q0VF96 1302 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 WIZO95785 1651 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 SEPT11Q9NVA2 429 aaKnown RBP11.8□□□□□ -0.52
COL12A1-201ENST00000322507 PAF1Q8N7H5 531 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 PKD2Q13563 968 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
COL12A1-201ENST00000322507 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 SCAPERQ9BY12 1400 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 CALCOCO1Q9P1Z2 691 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 EID1Q9Y6B2 187 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 TPRNQ4KMQ1 711 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 REC8O95072 547 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 SIN3AQ96ST3 1273 aa11.79□□□□□ -0.52
COL12A1-201ENST00000322507 DNAJC2Q99543 621 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms