RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 ABCA6Q8N139 1617 aa13.23□□□□□ -0.29
CAPN3-201ENST00000318023 PTPRMP28827 1452 aa13.23□□□□□ -0.29
CAPN3-201ENST00000318023 MAGI2Q86UL8 1455 aa13.23□□□□□ -0.29
CAPN3-201ENST00000318023 DIP2CQ9Y2E4 1556 aa13.22□□□□□ -0.29
CAPN3-201ENST00000318023 ITSN2Q9NZM3 1697 aa13.22□□□□□ -0.29
CAPN3-201ENST00000318023 MIA2Q96PC5 1412 aa13.22□□□□□ -0.29
CAPN3-201ENST00000318023 MADDQ8WXG6 1647 aa13.21□□□□□ -0.29
CAPN3-201ENST00000318023 PTPN23Q9H3S7 1636 aa13.21□□□□□ -0.3
CAPN3-201ENST00000318023 DAPK1P53355 1430 aa13.21□□□□□ -0.3
CAPN3-201ENST00000318023 KIDINS220Q9ULH0 1771 aa13.21□□□□□ -0.3
CAPN3-201ENST00000318023 KDM5CP41229 1560 aa13.2□□□□□ -0.3
CAPN3-201ENST00000318023 TRIM52Q96A61 297 aa13.2□□□□□ -0.3
CAPN3-201ENST00000318023 PTPRKQ15262 1439 aa13.2□□□□□ -0.3
CAPN3-201ENST00000318023 UBE2Q2Q8WVN8 375 aa13.2□□□□□ -0.3
CAPN3-201ENST00000318023 ZMYM4Q5VZL5 1548 aa13.2□□□□□ -0.3
CAPN3-201ENST00000318023 DHX29Q7Z478 1369 aaKnown RBP13.2□□□□□ -0.3
CAPN3-201ENST00000318023 RTN4Q9NQC3 1192 aaKnown RBP13.18□□□□□ -0.3
CAPN3-201ENST00000318023 RIMS1Q86UR5 1692 aaKnown RBP13.17□□□□□ -0.3
CAPN3-201ENST00000318023 ZMYM3Q14202 1370 aa13.17□□□□□ -0.3
CAPN3-201ENST00000318023 ANKRD30AQ9BXX3 1397 aa13.17□□□□□ -0.3
CAPN3-201ENST00000318023 CHGAP10645 457 aaKnown RBP13.17□□□□□ -0.3
CAPN3-201ENST00000318023 NBR1Q14596 966 aa13.14□□□□□ -0.31
CAPN3-201ENST00000318023 STAG3Q9UJ98 1225 aa13.14□□□□□ -0.31
CAPN3-201ENST00000318023 FOXD1Q16676 465 aa13.13□□□□□ -0.31
CAPN3-201ENST00000318023 BCORL1Q5H9F3 1711 aa13.13□□□□□ -0.31
CAPN3-201ENST00000318023 NEFLP07196 543 aa13.13□□□□□ -0.31
CAPN3-201ENST00000318023 NUTM2DQ5VT03 806 aaPredicted RBP13.12□□□□□ -0.31
CAPN3-201ENST00000318023 FANCIQ9NVI1 1328 aa13.12□□□□□ -0.31
CAPN3-201ENST00000318023 NCOA1Q15788 1441 aa13.12□□□□□ -0.31
CAPN3-201ENST00000318023 IL27Q8NEV9 243 aa13.12□□□□□ -0.31
CAPN3-201ENST00000318023 RTEL1-TNFRSF6BF6WH68 1400 aa13.12□□□□□ -0.31
CAPN3-201ENST00000318023 INO80Q9ULG1 1556 aaPredicted RBP13.11□□□□□ -0.31
CAPN3-201ENST00000318023 ANKRD50Q9ULJ7 1429 aa13.1□□□□□ -0.31
CAPN3-201ENST00000318023 CFAP65Q6ZU64 1925 aaKnown RBP13.1□□□□□ -0.31
CAPN3-201ENST00000318023 NUP155O75694 1391 aa13.09□□□□□ -0.31
CAPN3-201ENST00000318023 NCKAP5LQ9HCH0 1330 aa13.09□□□□□ -0.31
CAPN3-201ENST00000318023 ADAMTSL3P82987 1691 aa13.09□□□□□ -0.31
CAPN3-201ENST00000318023 TCOF1Q13428 1488 aaKnown RBP13.08□□□□□ -0.32
CAPN3-201ENST00000318023 ERICH6BQ5W0A0 696 aa13.08□□□□□ -0.32
CAPN3-201ENST00000318023 FER1L4A9Z1Z3 1794 aa13.07□□□□□ -0.32
CAPN3-201ENST00000318023 ARHGEF5Q12774 1597 aa13.07□□□□□ -0.32
CAPN3-201ENST00000318023 KANK1Q14678 1352 aa13.06□□□□□ -0.32
CAPN3-201ENST00000318023 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
CAPN3-201ENST00000318023 UHRF1BP1Q6BDS2 1440 aa13.05□□□□□ -0.32
CAPN3-201ENST00000318023 CLTCQ00610 1675 aaKnown RBP13.04□□□□□ -0.32
CAPN3-201ENST00000318023 SLC4A1APQ9BWU0 796 aaKnown RBP13.04□□□□□ -0.32
CAPN3-201ENST00000318023 AGLP35573 1532 aa13.03□□□□□ -0.32
CAPN3-201ENST00000318023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.03□□□□□ -0.32
CAPN3-201ENST00000318023 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.32
CAPN3-201ENST00000318023 DUOX2Q9NRD8 1548 aa13.02□□□□□ -0.32
CAPN3-201ENST00000318023 TNRQ92752 1358 aa13.02□□□□□ -0.32
CAPN3-201ENST00000318023 ADGBQ8N7X0 1667 aa13.02□□□□□ -0.33
CAPN3-201ENST00000318023 LMTK3Q96Q04 1460 aa13.02□□□□□ -0.33
CAPN3-201ENST00000318023 IDI1Q13907 227 aa13.02□□□□□ -0.33
CAPN3-201ENST00000318023 PLXNC1O60486 1568 aa13.01□□□□□ -0.33
CAPN3-201ENST00000318023 CNTLNQ9NXG0 1405 aa13.01□□□□□ -0.33
CAPN3-201ENST00000318023 PKD2Q13563 968 aa13□□□□□ -0.33
CAPN3-201ENST00000318023 RBM33Q96EV2 1170 aaKnown RBP13□□□□□ -0.33
CAPN3-201ENST00000318023 SHANK2Q9UPX8 1470 aa12.99□□□□□ -0.33
CAPN3-201ENST00000318023 EIF5BO60841 1220 aaKnown RBP12.99□□□□□ -0.33
CAPN3-201ENST00000318023 ZNF326Q5BKZ1 582 aaKnown RBP12.99□□□□□ -0.33
CAPN3-201ENST00000318023 RGL3Q3MIN7 710 aa12.98□□□□□ -0.33
CAPN3-201ENST00000318023 PPP6R1Q9UPN7 881 aa12.98□□□□□ -0.33
CAPN3-201ENST00000318023 ERBINQ96RT1 1412 aa12.98□□□□□ -0.33
CAPN3-201ENST00000318023 IRX6P78412 446 aaPredicted RBP12.97□□□□□ -0.33
CAPN3-201ENST00000318023 NPATQ14207 1427 aa12.97□□□□□ -0.33
CAPN3-201ENST00000318023 SLC26A8Q96RN1 970 aa12.97□□□□□ -0.33
CAPN3-201ENST00000318023 C3P01024 1663 aa12.97□□□□□ -0.33
CAPN3-201ENST00000318023 NAIPQ13075 1403 aa12.97□□□□□ -0.33
CAPN3-201ENST00000318023 PPP1R15AO75807 674 aaPredicted RBP12.97□□□□□ -0.33
CAPN3-201ENST00000318023 TXNDC2Q86VQ3 553 aa12.97□□□□□ -0.33
CAPN3-201ENST00000318023 REREQ9P2R6 1566 aa12.96□□□□□ -0.33
CAPN3-201ENST00000318023 ABCC3O15438 1527 aa12.96□□□□□ -0.33
CAPN3-201ENST00000318023 KDM5DQ9BY66 1539 aa12.96□□□□□ -0.33
CAPN3-201ENST00000318023 THEMISQ8N1K5 641 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-201ENST00000318023 PKNOX2Q96KN3 472 aa12.95□□□□□ -0.34
CAPN3-201ENST00000318023 MAST1Q9Y2H9 1570 aa12.95□□□□□ -0.34
CAPN3-201ENST00000318023 PAK3O75914 559 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-201ENST00000318023 ZNF335Q9H4Z2 1342 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-201ENST00000318023 CROCC2H7BZ55 1655 aa12.94□□□□□ -0.34
CAPN3-201ENST00000318023 ROCK1Q13464 1354 aa12.94□□□□□ -0.34
CAPN3-201ENST00000318023 LTKP29376 864 aa12.93□□□□□ -0.34
CAPN3-201ENST00000318023 ANKLE2Q86XL3 938 aa12.93□□□□□ -0.34
CAPN3-201ENST00000318023 ADGRL2O95490 1459 aa12.93□□□□□ -0.34
CAPN3-201ENST00000318023 CEP152O94986 1710 aa12.93□□□□□ -0.34
CAPN3-201ENST00000318023 MPHOSPH9Q99550 1183 aa12.92□□□□□ -0.34
CAPN3-201ENST00000318023 NOP58Q9Y2X3 529 aaKnown RBP12.92□□□□□ -0.34
CAPN3-201ENST00000318023 RAB3GAP2Q9H2M9 1393 aa12.92□□□□□ -0.34
CAPN3-201ENST00000318023 PZPP20742 1482 aa12.91□□□□□ -0.34
CAPN3-201ENST00000318023 UGGT1Q9NYU2 1555 aa12.91□□□□□ -0.34
CAPN3-201ENST00000318023 MROH1Q8NDA8 1641 aa12.91□□□□□ -0.34
CAPN3-201ENST00000318023 SETD1BQ9UPS6 1966 aaKnown RBP12.9□□□□□ -0.34
CAPN3-201ENST00000318023 EID1Q9Y6B2 187 aa12.9□□□□□ -0.34
CAPN3-201ENST00000318023 ERVK-7P63135 1459 aa12.9□□□□□ -0.35
CAPN3-201ENST00000318023 CAMSAP1Q5T5Y3 1602 aa12.89□□□□□ -0.35
CAPN3-201ENST00000318023 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
CAPN3-201ENST00000318023 RTL5Q5HYW3 569 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-201ENST00000318023 HFM1A2PYH4 1435 aa12.88□□□□□ -0.35
CAPN3-201ENST00000318023 PRDM15P57071 1507 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-201ENST00000318023 SETD5Q9C0A6 1442 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms