RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TERF2IPQ9NYB0 399 aa19.05■□□□□ 0.64
HCFC1-201ENST00000310441 CHMP3Q9Y3E7 222 aa19.05■□□□□ 0.64
HCFC1-201ENST00000310441 APBB1O00213 710 aa19.05■□□□□ 0.64
HCFC1-201ENST00000310441 SMC4Q9NTJ3 1288 aa19.05■□□□□ 0.64
HCFC1-201ENST00000310441 MFAP1P55081 439 aaKnown RBP19.04■□□□□ 0.64
HCFC1-201ENST00000310441 CCDC47Q96A33 483 aaKnown RBP19.04■□□□□ 0.64
HCFC1-201ENST00000310441 U2AF1L5P0DN76 240 aaPredicted RBP19.03■□□□□ 0.64
HCFC1-201ENST00000310441 U2AF1Q01081 240 aaKnown RBP eCLIP19.03■□□□□ 0.64
HCFC1-201ENST00000310441 VPS53Q5VIR6 699 aa19.03■□□□□ 0.64
HCFC1-201ENST00000310441 AMOTL1Q8IY63 956 aa19.03■□□□□ 0.64
HCFC1-201ENST00000310441 RDXP35241 583 aaKnown RBP19.03■□□□□ 0.64
HCFC1-201ENST00000310441 MTERF4Q7Z6M4 381 aaKnown RBP19.02■□□□□ 0.64
HCFC1-201ENST00000310441 RUFY1Q96T51 708 aa19.01■□□□□ 0.63
HCFC1-201ENST00000310441 CPLX2Q6PUV4 134 aaKnown RBP19.01■□□□□ 0.63
HCFC1-201ENST00000310441 ZNF771Q7L3S4 317 aaPredicted RBP19.01■□□□□ 0.63
HCFC1-201ENST00000310441 FAM184AQ8NB25 1140 aa19.01■□□□□ 0.63
HCFC1-201ENST00000310441 DCTN1Q14203 1278 aa19■□□□□ 0.63
HCFC1-201ENST00000310441 ARGLU1Q9NWB6 273 aaPredicted RBP19■□□□□ 0.63
HCFC1-201ENST00000310441 CENPJQ9HC77 1338 aaPredicted RBP19■□□□□ 0.63
HCFC1-201ENST00000310441 MYO6Q9UM54 1294 aa19■□□□□ 0.63
HCFC1-201ENST00000310441 ROCK1Q13464 1354 aa18.99■□□□□ 0.63
HCFC1-201ENST00000310441 CCAR2Q8N163 923 aaKnown RBP18.99■□□□□ 0.63
HCFC1-201ENST00000310441 SYNE3Q6ZMZ3 975 aa18.98■□□□□ 0.63
HCFC1-201ENST00000310441 UACAQ9BZF9 1416 aa18.98■□□□□ 0.63
HCFC1-201ENST00000310441 CWC15Q9P013 229 aaKnown RBP18.97■□□□□ 0.63
HCFC1-201ENST00000310441 FMN1Q68DA7 1419 aa18.97■□□□□ 0.63
HCFC1-201ENST00000310441 KRI1Q8N9T8 703 aaKnown RBP18.97■□□□□ 0.63
HCFC1-201ENST00000310441 CARMIL2Q6F5E8 1435 aa18.97■□□□□ 0.63
HCFC1-201ENST00000310441 REC8O95072 547 aa18.97■□□□□ 0.63
HCFC1-201ENST00000310441 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.96■□□□□ 0.63
HCFC1-201ENST00000310441 CSB-PGBD3P0DP91 1061 aa18.96■□□□□ 0.63
HCFC1-201ENST00000310441 PDE4CQ08493 712 aa18.96■□□□□ 0.63
HCFC1-201ENST00000310441 SENP3-EIF4A1A0A087X0R7 540 aa18.96■□□□□ 0.63
HCFC1-201ENST00000310441 RUFY2Q8WXA3 655 aa18.96■□□□□ 0.63
HCFC1-201ENST00000310441 TRIM29Q14134 588 aa18.95■□□□□ 0.62
HCFC1-201ENST00000310441 CENPQQ7L2Z9 268 aaPredicted RBP18.95■□□□□ 0.62
HCFC1-201ENST00000310441 FRAT2O75474 233 aaPredicted RBP18.94■□□□□ 0.62
HCFC1-201ENST00000310441 PAK3O75914 559 aaPredicted RBP18.94■□□□□ 0.62
HCFC1-201ENST00000310441 CCDC191Q8NCU4 936 aa18.94■□□□□ 0.62
HCFC1-201ENST00000310441 NOL10Q9BSC4 688 aaKnown RBP18.94■□□□□ 0.62
HCFC1-201ENST00000310441 KIF15Q9NS87 1388 aa18.94■□□□□ 0.62
HCFC1-201ENST00000310441 SOX12O15370 315 aa18.93■□□□□ 0.62
HCFC1-201ENST00000310441 HSP90B2PQ58FF3 399 aa18.93■□□□□ 0.62
HCFC1-201ENST00000310441 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.93■□□□□ 0.623e-6■■□□□ 14.2
HCFC1-201ENST00000310441 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.92■□□□□ 0.62
HCFC1-201ENST00000310441 ZNF330Q9Y3S2 320 aaPredicted RBP18.92■□□□□ 0.62
HCFC1-201ENST00000310441 ANKRD30AQ9BXX3 1397 aa18.92■□□□□ 0.62
HCFC1-201ENST00000310441 CCDC173Q0VFZ6 552 aa18.91■□□□□ 0.62
HCFC1-201ENST00000310441 NAT10Q9H0A0 1025 aaKnown RBP18.91■□□□□ 0.62
HCFC1-201ENST00000310441 DDX49Q9Y6V7 483 aaKnown RBP18.91■□□□□ 0.62
HCFC1-201ENST00000310441 NLRP13Q86W25 1043 aa18.91■□□□□ 0.62
HCFC1-201ENST00000310441 WWC1Q8IX03 1113 aa18.9■□□□□ 0.62
HCFC1-201ENST00000310441 ZKSCAN1P17029 563 aaPredicted RBP18.9■□□□□ 0.62
HCFC1-201ENST00000310441 TRIM34Q9BYJ4 488 aa18.9■□□□□ 0.62
HCFC1-201ENST00000310441 TOMM22Q9NS69 142 aa18.9■□□□□ 0.62
HCFC1-201ENST00000310441 CCDC18Q5T9S5 1454 aa18.89■□□□□ 0.62
HCFC1-201ENST00000310441 SIN3AQ96ST3 1273 aa18.89■□□□□ 0.61
HCFC1-201ENST00000310441 MAP7D2Q96T17 732 aa18.89■□□□□ 0.61
HCFC1-201ENST00000310441 VPS8Q8N3P4 1428 aa18.89■□□□□ 0.61
HCFC1-201ENST00000310441 GSE1Q14687 1217 aa18.89■□□□□ 0.61
HCFC1-201ENST00000310441 RNF20Q5VTR2 975 aa18.88■□□□□ 0.61
HCFC1-201ENST00000310441 FAM161AQ3B820 660 aa18.88■□□□□ 0.61
HCFC1-201ENST00000310441 HOMER1Q86YM7 354 aa18.88■□□□□ 0.61
HCFC1-201ENST00000310441 ZRSR2Q15696 482 aaKnown RBP18.88■□□□□ 0.61
HCFC1-201ENST00000310441 ERCC4Q92889 916 aaPredicted RBP18.88■□□□□ 0.61
HCFC1-201ENST00000310441 PCMTD1Q96MG8 357 aaPredicted RBP18.87■□□□□ 0.61
HCFC1-201ENST00000310441 ODF2Q5BJF6 829 aa18.87■□□□□ 0.61
HCFC1-201ENST00000310441 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
HCFC1-201ENST00000310441 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
HCFC1-201ENST00000310441 CGNL1Q0VF96 1302 aa18.86■□□□□ 0.61
HCFC1-201ENST00000310441 DIAPH3Q9NSV4 1193 aa18.86■□□□□ 0.61
HCFC1-201ENST00000310441 GTF2E1P29083 439 aaPredicted RBP18.86■□□□□ 0.61
HCFC1-201ENST00000310441 PATL2C9JE40 543 aaKnown RBP18.85■□□□□ 0.61
HCFC1-201ENST00000310441 DHX8Q14562 1220 aaKnown RBP18.85■□□□□ 0.61
HCFC1-201ENST00000310441 HSPA5P11021 654 aaKnown RBP18.85■□□□□ 0.61
HCFC1-201ENST00000310441 SLC4A10Q6U841 1118 aa18.84■□□□□ 0.61
HCFC1-201ENST00000310441 CCP110O43303 1012 aa18.84■□□□□ 0.61
HCFC1-201ENST00000310441 CCDC43Q96MW1 224 aaKnown RBP18.84■□□□□ 0.61
HCFC1-201ENST00000310441 CT47A1Q5JQC4 288 aaPredicted RBP18.84■□□□□ 0.61
HCFC1-201ENST00000310441 CTDP1Q9Y5B0 961 aaPredicted RBP18.84■□□□□ 0.61
HCFC1-201ENST00000310441 NEXNQ0ZGT2 675 aa18.83■□□□□ 0.61
HCFC1-201ENST00000310441 EID1Q9Y6B2 187 aa18.83■□□□□ 0.6
HCFC1-201ENST00000310441 MCTP1Q6DN14 999 aa18.83■□□□□ 0.6
HCFC1-201ENST00000310441 AAMPQ13685 434 aa18.82■□□□□ 0.6
HCFC1-201ENST00000310441 TRDNQ13061 729 aa18.82■□□□□ 0.6
HCFC1-201ENST00000310441 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 CCDC66A2RUB6 948 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 SAFB2Q14151 953 aaKnown RBP eCLIP18.81■□□□□ 0.6
HCFC1-201ENST00000310441 CPLX1O14810 134 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 ZNF592Q92610 1267 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 EPS15P42566 896 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 CNKSR2Q8WXI2 1034 aa18.81■□□□□ 0.6
HCFC1-201ENST00000310441 STK26Q9P289 416 aa18.8■□□□□ 0.6
HCFC1-201ENST00000310441 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
HCFC1-201ENST00000310441 RSPH4AQ5TD94 716 aa18.8■□□□□ 0.6
HCFC1-201ENST00000310441 PKD2Q13563 968 aa18.79■□□□□ 0.6
HCFC1-201ENST00000310441 ERICH2A1L162 156 aa18.79■□□□□ 0.6
HCFC1-201ENST00000310441 NUP155O75694 1391 aa18.79■□□□□ 0.6
HCFC1-201ENST00000310441 AMPHP49418 695 aa18.79■□□□□ 0.6
HCFC1-201ENST00000310441 SASS6Q6UVJ0 657 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms