RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 TRAPPC8Q9Y2L5 1435 aa17.19■□□□□ 0.34
TRIM40-205ENST00000307859 INO80Q9ULG1 1556 aaPredicted RBP17.18■□□□□ 0.34
TRIM40-205ENST00000307859 ZFYVE16Q7Z3T8 1539 aa17.18■□□□□ 0.34
TRIM40-205ENST00000307859 ARHGEF40Q8TER5 1519 aa17.18■□□□□ 0.34
TRIM40-205ENST00000307859 TONSLQ96HA7 1378 aa17.18■□□□□ 0.34
TRIM40-205ENST00000307859 ANKRD30BQ9BXX2 1392 aa17.18■□□□□ 0.34
TRIM40-205ENST00000307859 RTEL1-TNFRSF6BF6WH68 1400 aa17.16■□□□□ 0.34
TRIM40-205ENST00000307859 SLC4A1APQ9BWU0 796 aaKnown RBP17.15■□□□□ 0.34
TRIM40-205ENST00000307859 YEATS2Q9ULM3 1422 aa17.15■□□□□ 0.34
TRIM40-205ENST00000307859 RPRD2Q5VT52 1461 aaKnown RBP17.15■□□□□ 0.34
TRIM40-205ENST00000307859 IQGAP3Q86VI3 1631 aa17.14■□□□□ 0.33
TRIM40-205ENST00000307859 ERBINQ96RT1 1412 aa17.14■□□□□ 0.33
TRIM40-205ENST00000307859 PPP1R15AO75807 674 aaPredicted RBP17.14■□□□□ 0.33
TRIM40-205ENST00000307859 MAGI2Q86UL8 1455 aa17.13■□□□□ 0.33
TRIM40-205ENST00000307859 ATP7AQ04656 1500 aa17.12■□□□□ 0.33
TRIM40-205ENST00000307859 FAM135AQ9P2D6 1515 aa17.11■□□□□ 0.33
TRIM40-205ENST00000307859 DIEXFQ68CQ4 756 aaKnown RBP17.11■□□□□ 0.33
TRIM40-205ENST00000307859 NUP155O75694 1391 aa17.1■□□□□ 0.33
TRIM40-205ENST00000307859 FOXD1Q16676 465 aa17.1■□□□□ 0.33
TRIM40-205ENST00000307859 DEPDC5O75140 1603 aa17.09■□□□□ 0.33
TRIM40-205ENST00000307859 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
TRIM40-205ENST00000307859 KIDINS220Q9ULH0 1771 aa17.09■□□□□ 0.33
TRIM40-205ENST00000307859 SCAPERQ9BY12 1400 aa17.09■□□□□ 0.33
TRIM40-205ENST00000307859 IQSEC2Q5JU85 1478 aa17.08■□□□□ 0.33
TRIM40-205ENST00000307859 EIF2AK4Q9P2K8 1649 aaKnown RBP17.08■□□□□ 0.32
TRIM40-205ENST00000307859 KDM5CP41229 1560 aa17.07■□□□□ 0.32
TRIM40-205ENST00000307859 SPAG9O60271 1321 aaKnown RBP17.07■□□□□ 0.32
TRIM40-205ENST00000307859 PTPRTO14522 1441 aa17.06■□□□□ 0.32
TRIM40-205ENST00000307859 PKD2Q13563 968 aa17.06■□□□□ 0.32
TRIM40-205ENST00000307859 ZMYM4Q5VZL5 1548 aa17.06■□□□□ 0.32
TRIM40-205ENST00000307859 PREX1Q8TCU6 1659 aa17.05■□□□□ 0.32
TRIM40-205ENST00000307859 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
TRIM40-205ENST00000307859 RICTORQ6R327 1708 aa17.05■□□□□ 0.32
TRIM40-205ENST00000307859 AFAP1Q8N556 730 aa17.04■□□□□ 0.32
TRIM40-205ENST00000307859 STRCQ7RTU9 1775 aa17.02■□□□□ 0.32
TRIM40-205ENST00000307859 FER1L4A9Z1Z3 1794 aa17.02■□□□□ 0.31
TRIM40-205ENST00000307859 MLECQ14165 292 aa16.99■□□□□ 0.31
TRIM40-205ENST00000307859 L3MBTL2Q969R5 705 aa16.99■□□□□ 0.31
TRIM40-205ENST00000307859 VWDEQ8N2E2 1590 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 MLH3Q9UHC1 1453 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 UHRF1BP1Q6BDS2 1440 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 E9PCH4 1651 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 TET3O43151 1660 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 LTBP4Q8N2S1 1624 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 MROH1Q8NDA8 1641 aa16.98■□□□□ 0.31
TRIM40-205ENST00000307859 PRDM15P57071 1507 aaPredicted RBP16.98■□□□□ 0.31
TRIM40-205ENST00000307859 SIGLEC1Q9BZZ2 1709 aa16.97■□□□□ 0.31
TRIM40-205ENST00000307859 ATP10AO60312 1499 aa16.96■□□□□ 0.31
TRIM40-205ENST00000307859 ABCA6Q8N139 1617 aa16.96■□□□□ 0.31
TRIM40-205ENST00000307859 RNF17Q9BXT8 1623 aaKnown RBP16.96■□□□□ 0.31
TRIM40-205ENST00000307859 DHX29Q7Z478 1369 aaKnown RBP16.94■□□□□ 0.3
TRIM40-205ENST00000307859 SPHKAPQ2M3C7 1700 aa16.94■□□□□ 0.3
TRIM40-205ENST00000307859 PLA2R1Q13018 1463 aa16.94■□□□□ 0.3
TRIM40-205ENST00000307859 SETD1BQ9UPS6 1966 aaKnown RBP16.93■□□□□ 0.3
TRIM40-205ENST00000307859 CEBPAP49715 358 aaPredicted RBP16.92■□□□□ 0.3
TRIM40-205ENST00000307859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.92■□□□□ 0.3
TRIM40-205ENST00000307859 A2MP01023 1474 aa16.92■□□□□ 0.3
TRIM40-205ENST00000307859 DIP2CQ9Y2E4 1556 aa16.9■□□□□ 0.3
TRIM40-205ENST00000307859 CEP152O94986 1710 aa16.89■□□□□ 0.29
TRIM40-205ENST00000307859 POLR1AO95602 1720 aaPredicted RBP16.89■□□□□ 0.29
TRIM40-205ENST00000307859 CCDC144AA2RUR9 1427 aa16.89■□□□□ 0.29
TRIM40-205ENST00000307859 TRPM2O94759 1503 aa16.88■□□□□ 0.29
TRIM40-205ENST00000307859 NBPF8Q3BBV2 869 aa16.87■□□□□ 0.29
TRIM40-205ENST00000307859 LMTK2Q8IWU2 1503 aa16.87■□□□□ 0.29
TRIM40-205ENST00000307859 KANK1Q14678 1352 aa16.86■□□□□ 0.29
TRIM40-205ENST00000307859 MYT1LQ9UL68 1186 aa16.86■□□□□ 0.29
TRIM40-205ENST00000307859 EFCAB6Q5THR3 1501 aa16.85■□□□□ 0.29
TRIM40-205ENST00000307859 RALGAPBQ86X10 1494 aa16.84■□□□□ 0.29
TRIM40-205ENST00000307859 KIF3BO15066 747 aa16.84■□□□□ 0.29
TRIM40-205ENST00000307859 UBAP1LF5GYI3 381 aa16.83■□□□□ 0.28
TRIM40-205ENST00000307859 MIER1Q8N108 512 aa16.83■□□□□ 0.28
TRIM40-205ENST00000307859 CLTCL1P53675 1640 aa16.82■□□□□ 0.28
TRIM40-205ENST00000307859 TRPM1Q7Z4N2 1603 aa16.82■□□□□ 0.28
TRIM40-205ENST00000307859 NEURL4Q96JN8 1562 aa16.81■□□□□ 0.28
TRIM40-205ENST00000307859 ZC3H13Q5T200 1668 aaKnown RBP16.8■□□□□ 0.28
TRIM40-205ENST00000307859 SPATA31E1Q6ZUB1 1445 aa16.8■□□□□ 0.28
TRIM40-205ENST00000307859 EIF4G2P78344 907 aaKnown RBP eCLIP16.8■□□□□ 0.28
TRIM40-205ENST00000307859 HSPA5P11021 654 aaKnown RBP16.79■□□□□ 0.28
TRIM40-205ENST00000307859 HIRIP3Q9BW71 556 aaPredicted RBP16.79■□□□□ 0.28
TRIM40-205ENST00000307859 KIF1BO60333 1816 aa16.79■□□□□ 0.28
TRIM40-205ENST00000307859 CAMSAP1Q5T5Y3 1602 aa16.78■□□□□ 0.28
TRIM40-205ENST00000307859 LAMC1P11047 1609 aa16.78■□□□□ 0.28
TRIM40-205ENST00000307859 MED1Q15648 1581 aaPredicted RBP16.77■□□□□ 0.28
TRIM40-205ENST00000307859 REREQ9P2R6 1566 aa16.77■□□□□ 0.28
TRIM40-205ENST00000307859 ABCC3O15438 1527 aa16.77■□□□□ 0.27
TRIM40-205ENST00000307859 PRAG1Q86YV5 1406 aa16.76■□□□□ 0.27
TRIM40-205ENST00000307859 CFAP65Q6ZU64 1925 aaKnown RBP16.75■□□□□ 0.27
TRIM40-205ENST00000307859 IFT172Q9UG01 1749 aa16.74■□□□□ 0.27
TRIM40-205ENST00000307859 C3P01024 1663 aa16.74■□□□□ 0.27
TRIM40-205ENST00000307859 ZNF335Q9H4Z2 1342 aaPredicted RBP16.73■□□□□ 0.27
TRIM40-205ENST00000307859 DDX10Q13206 875 aaKnown RBP16.73■□□□□ 0.27
TRIM40-205ENST00000307859 DCAF11Q8TEB1 546 aa16.73■□□□□ 0.27
TRIM40-205ENST00000307859 ESF1Q9H501 851 aaKnown RBP16.73■□□□□ 0.27
TRIM40-205ENST00000307859 CNTLNQ9NXG0 1405 aa16.72■□□□□ 0.27
TRIM40-205ENST00000307859 AGLP35573 1532 aa16.72■□□□□ 0.27
TRIM40-205ENST00000307859 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
TRIM40-205ENST00000307859 USP47Q96K76 1375 aa16.7■□□□□ 0.26
TRIM40-205ENST00000307859 ZNF326Q5BKZ1 582 aaKnown RBP16.7■□□□□ 0.26
TRIM40-205ENST00000307859 NPATQ14207 1427 aa16.7■□□□□ 0.26
TRIM40-205ENST00000307859 HSPA1LP34931 641 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms