RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 EEA1Q15075 1411 aa9.86□□□□□ -0.83
SCN9A-201ENST00000303354 CWC22Q9HCG8 908 aaKnown RBP9.85□□□□□ -0.83
SCN9A-201ENST00000303354 PLIN1O60240 522 aa9.85□□□□□ -0.83
SCN9A-201ENST00000303354 RILPL2Q969X0 211 aa9.85□□□□□ -0.83
SCN9A-201ENST00000303354 STRN4Q9NRL3 753 aa9.85□□□□□ -0.83
SCN9A-201ENST00000303354 SLKQ9H2G2 1235 aaPredicted RBP9.84□□□□□ -0.83
SCN9A-201ENST00000303354 ABCC8Q09428 1581 aa9.84□□□□□ -0.83
SCN9A-201ENST00000303354 FOSBP53539 338 aa9.84□□□□□ -0.83
SCN9A-201ENST00000303354 AIMP1Q12904 312 aaKnown RBP9.84□□□□□ -0.83
SCN9A-201ENST00000303354 L1TD1Q5T7N2 865 aaKnown RBP9.84□□□□□ -0.83
SCN9A-201ENST00000303354 CARMIL2Q6F5E8 1435 aa9.83□□□□□ -0.84
SCN9A-201ENST00000303354 KRI1Q8N9T8 703 aaKnown RBP9.83□□□□□ -0.84
SCN9A-201ENST00000303354 TRIM34Q9BYJ4 488 aa9.82□□□□□ -0.84
SCN9A-201ENST00000303354 OSCARQ8IYS5 282 aa9.82□□□□□ -0.84
SCN9A-201ENST00000303354 STK11IPQ8N1F8 1099 aa9.82□□□□□ -0.84
SCN9A-201ENST00000303354 CTDP1Q9Y5B0 961 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-201ENST00000303354 PES1O00541 588 aaKnown RBP9.82□□□□□ -0.84
SCN9A-201ENST00000303354 GOLGA6L6A8MZA4 724 aa9.81□□□□□ -0.84
SCN9A-201ENST00000303354 PPP4R2Q9NY27 417 aa9.81□□□□□ -0.84
SCN9A-201ENST00000303354 DHX16O60231 1041 aaKnown RBP9.8□□□□□ -0.84
SCN9A-201ENST00000303354 ATF3P18847 181 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 CHMP4CQ96CF2 233 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 KTN1Q86UP2 1357 aaKnown RBP9.8□□□□□ -0.84
SCN9A-201ENST00000303354 HMOX1P09601 288 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 MS4A1P11836 297 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 CNKSR2Q8WXI2 1034 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 TERF2IPQ9NYB0 399 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 CEP164Q9UPV0 1460 aa9.8□□□□□ -0.84
SCN9A-201ENST00000303354 TTC5Q8N0Z6 440 aa9.79□□□□□ -0.84
SCN9A-201ENST00000303354 PMFBP1Q8TBY8 1022 aa9.79□□□□□ -0.84
SCN9A-201ENST00000303354 NOC3LQ8WTT2 800 aaKnown RBP9.79□□□□□ -0.84
SCN9A-201ENST00000303354 IBSPP21815 317 aaPredicted RBP9.79□□□□□ -0.84
SCN9A-201ENST00000303354 APPP05067 770 aa9.79□□□□□ -0.84
SCN9A-201ENST00000303354 VPS37DQ86XT2 251 aa9.79□□□□□ -0.84
SCN9A-201ENST00000303354 COG3Q96JB2 828 aa9.79□□□□□ -0.84
SCN9A-201ENST00000303354 XPCQ01831 940 aaPredicted RBP9.79□□□□□ -0.84
SCN9A-201ENST00000303354 FHOD3Q2V2M9 1422 aa9.78□□□□□ -0.84
SCN9A-201ENST00000303354 RBM42Q9BTD8 480 aaKnown RBP9.78□□□□□ -0.84
SCN9A-201ENST00000303354 CHMP4BQ9H444 224 aaKnown RBP9.78□□□□□ -0.84
SCN9A-201ENST00000303354 SMARCA2P51531 1590 aa9.78□□□□□ -0.84
SCN9A-201ENST00000303354 RBM33Q96EV2 1170 aaKnown RBP9.78□□□□□ -0.84
SCN9A-201ENST00000303354 DCAF8L1A6NGE4 600 aa9.78□□□□□ -0.84
SCN9A-201ENST00000303354 IPO8O15397 1037 aaKnown RBP9.78□□□□□ -0.84
SCN9A-201ENST00000303354 TEFQ10587 303 aa9.78□□□□□ -0.84
SCN9A-201ENST00000303354 TMEM132EQ6IEE7 984 aa9.78□□□□□ -0.84
SCN9A-201ENST00000303354 PANK3Q9H999 370 aa9.77□□□□□ -0.84
SCN9A-201ENST00000303354 BCL11BQ9C0K0 894 aaPredicted RBP9.77□□□□□ -0.84
SCN9A-201ENST00000303354 L3MBTL2Q969R5 705 aa9.77□□□□□ -0.85
SCN9A-201ENST00000303354 ESCO1Q5FWF5 840 aa9.77□□□□□ -0.85
SCN9A-201ENST00000303354 CCDC27Q2M243 656 aa9.77□□□□□ -0.85
SCN9A-201ENST00000303354 ARHGAP35Q9NRY4 1499 aa9.77□□□□□ -0.85
SCN9A-201ENST00000303354 TNIKQ9UKE5 1360 aa9.76□□□□□ -0.85
SCN9A-201ENST00000303354 NLRP2Q9NX02 1062 aa9.76□□□□□ -0.85
SCN9A-201ENST00000303354 RCAN3Q9UKA8 241 aa9.76□□□□□ -0.85
SCN9A-201ENST00000303354 PDS5BQ9NTI5 1447 aa9.76□□□□□ -0.85
SCN9A-201ENST00000303354 GPATCH3Q96I76 525 aa9.75□□□□□ -0.85
SCN9A-201ENST00000303354 KIAA2012Q0VF49 1180 aa9.75□□□□□ -0.85
SCN9A-201ENST00000303354 NOP58Q9Y2X3 529 aaKnown RBP9.75□□□□□ -0.85
SCN9A-201ENST00000303354 DDX54Q8TDD1 881 aaKnown RBP9.75□□□□□ -0.85
SCN9A-201ENST00000303354 CABP2Q9NPB3 220 aa9.75□□□□□ -0.85
SCN9A-201ENST00000303354 ANKRD45Q5TZF3 282 aa9.75□□□□□ -0.85
SCN9A-201ENST00000303354 TCEAL9Q9UHQ7 104 aa9.75□□□□□ -0.85
SCN9A-201ENST00000303354 GLIPR1L2Q4G1C9 344 aa9.74□□□□□ -0.85
SCN9A-201ENST00000303354 SETD5Q9C0A6 1442 aa9.74□□□□□ -0.85
SCN9A-201ENST00000303354 ST20-MTHFSA0A0A6YYL1 179 aa9.74□□□□□ -0.85
SCN9A-201ENST00000303354 SF3B2Q13435 895 aaKnown RBP9.74□□□□□ -0.85
SCN9A-201ENST00000303354 ANKRD30AQ9BXX3 1397 aa9.73□□□□□ -0.85
SCN9A-201ENST00000303354 C9orf78Q9NZ63 289 aaPredicted RBP9.73□□□□□ -0.85
SCN9A-201ENST00000303354 NOL10Q9BSC4 688 aaKnown RBP9.72□□□□□ -0.85
SCN9A-201ENST00000303354 GGNBP2Q9H3C7 697 aa9.72□□□□□ -0.85
SCN9A-201ENST00000303354 MCTP1Q6DN14 999 aa9.72□□□□□ -0.85
SCN9A-201ENST00000303354 RWDD1Q9H446 243 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-201ENST00000303354 NEUROD6Q96NK8 337 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 CALD1Q05682 793 aaKnown RBP9.71□□□□□ -0.85
SCN9A-201ENST00000303354 SF3A1Q15459 793 aaKnown RBP9.71□□□□□ -0.85
SCN9A-201ENST00000303354 WWC3Q9ULE0 1092 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 RAB3GAP2Q9H2M9 1393 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 FHAD1B1AJZ9 1412 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 CCDC88BA6NC98 1476 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 BICDL1Q6ZP65 573 aa9.71□□□□□ -0.85
SCN9A-201ENST00000303354 A0A0U1RQG5 324 aaPredicted RBP9.71□□□□□ -0.86
SCN9A-201ENST00000303354 PROSER2Q86WR7 435 aaPredicted RBP9.7□□□□□ -0.86
SCN9A-201ENST00000303354 RIC3Q7Z5B4 369 aa9.7□□□□□ -0.86
SCN9A-201ENST00000303354 IKQ13123 557 aaPredicted RBP9.7□□□□□ -0.86
SCN9A-201ENST00000303354 ZNF219Q9P2Y4 722 aaPredicted RBP9.7□□□□□ -0.86
SCN9A-201ENST00000303354 ZNF644Q9H582 1327 aaPredicted RBP9.7□□□□□ -0.86
SCN9A-201ENST00000303354 MSNP26038 577 aaKnown RBP9.7□□□□□ -0.86
SCN9A-201ENST00000303354 H3BQV1 296 aa9.69□□□□□ -0.86
SCN9A-201ENST00000303354 IFFO2Q5TF58 517 aa9.69□□□□□ -0.86
SCN9A-201ENST00000303354 TPD52L1Q16890 204 aaPredicted RBP9.69□□□□□ -0.86
SCN9A-201ENST00000303354 NRDCO43847 1150 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 RAPGEF4Q8WZA2 1011 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 ANP32EQ9BTT0 268 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 CENPJQ9HC77 1338 aaPredicted RBP9.68□□□□□ -0.86
SCN9A-201ENST00000303354 AKAP17AQ02040 695 aaKnown RBP9.68□□□□□ -0.86
SCN9A-201ENST00000303354 TXNDC2Q86VQ3 553 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 ABTB2Q8N961 1025 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 FAM184AQ8NB25 1140 aa9.68□□□□□ -0.86
SCN9A-201ENST00000303354 SPINK5Q9NQ38 1064 aaPredicted RBP9.68□□□□□ -0.86
SCN9A-201ENST00000303354 NLRP6P59044 892 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms