RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 TUBB4BP68371 445 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 KNSTRNQ9Y448 316 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 RWDD1Q9H446 243 aaPredicted RBP5.93□□□□□ -1.46
CSMD3-201ENST00000297405 SPATA24Q86W54 205 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 MCM3P25205 808 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 GOLGA3Q08378 1498 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 HMGB3O15347 200 aaKnown RBP5.93□□□□□ -1.46
CSMD3-201ENST00000297405 KCNJ4P48050 445 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 PAIP2Q9BPZ3 127 aaKnown RBP5.93□□□□□ -1.46
CSMD3-201ENST00000297405 GPATCH3Q96I76 525 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 RP1P56715 2156 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 AEBP1Q8IUX7 1158 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 FEZ1Q99689 392 aa5.93□□□□□ -1.46
CSMD3-201ENST00000297405 CITO14578 2027 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 FHAD1B1AJZ9 1412 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 NF2P35240 595 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 CCDC173Q0VFZ6 552 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 CEP162Q5TB80 1403 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 GNL2Q13823 731 aaKnown RBP5.92□□□□□ -1.46
CSMD3-201ENST00000297405 RABEP1Q15276 862 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 SWAP70Q9UH65 585 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 NUDCQ9Y266 331 aa5.92□□□□□ -1.46
CSMD3-201ENST00000297405 MBD3O95983 291 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 AMER1Q5JTC6 1135 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-201ENST00000297405 NUCB2P80303 420 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 FAM184AQ8NB25 1140 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 MYO9BQ13459 2157 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 WWC1Q8IX03 1113 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 SPAG17Q6Q759 2223 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 CLGNO14967 610 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 KIAA1328Q86T90 577 aa5.91□□□□□ -1.46
CSMD3-201ENST00000297405 MCM5P33992 734 aa5.9□□□□□ -1.46
CSMD3-201ENST00000297405 CENPQQ7L2Z9 268 aaPredicted RBP5.9□□□□□ -1.46
CSMD3-201ENST00000297405 TTLL5Q6EMB2 1281 aa5.9□□□□□ -1.46
CSMD3-201ENST00000297405 FAM13BQ9NYF5 915 aa5.9□□□□□ -1.46
CSMD3-201ENST00000297405 LRRFIP1Q32MZ4 808 aaKnown RBP5.9□□□□□ -1.46
CSMD3-201ENST00000297405 ERLIN1O75477 346 aa5.9□□□□□ -1.46
CSMD3-201ENST00000297405 KIF3BO15066 747 aa5.9□□□□□ -1.47
CSMD3-201ENST00000297405 RP1L1Q8IWN7 2480 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-201ENST00000297405 ICE1Q9Y2F5 2266 aa5.9□□□□□ -1.47
CSMD3-201ENST00000297405 NAP1L2Q9ULW6 460 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-201ENST00000297405 LUC7LQ9NQ29 371 aaKnown RBP5.9□□□□□ -1.47
CSMD3-201ENST00000297405 CLIP1P30622 1438 aa5.9□□□□□ -1.47
CSMD3-201ENST00000297405 MYO7AQ13402 2215 aa5.9□□□□□ -1.47
CSMD3-201ENST00000297405 CREBRFQ8IUR6 639 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 RALBP1Q15311 655 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 GIMAP7Q8NHV1 300 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 TMCO5BA8MYB1 307 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 CEP164Q9UPV0 1460 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 REC8O95072 547 aa5.89□□□□□ -1.47
CSMD3-201ENST00000297405 BECN2A8MW95 431 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 NASPP49321 788 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-201ENST00000297405 MAP1BP46821 2468 aaKnown RBP5.88□□□□□ -1.47
CSMD3-201ENST00000297405 GBP3Q9H0R5 595 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 IRX3P78415 501 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-201ENST00000297405 FAM161AQ3B820 660 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 ANKRD18AQ8IVF6 992 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 ANKRD30AQ9BXX3 1397 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 PATL2C9JE40 543 aaKnown RBP5.88□□□□□ -1.47
CSMD3-201ENST00000297405 ERLIN2O94905 339 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 MCM2P49736 904 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 MEX3CQ5U5Q3 659 aaKnown RBP5.88□□□□□ -1.47
CSMD3-201ENST00000297405 GOLGA6L9A6NEM1 432 aa5.88□□□□□ -1.47
CSMD3-201ENST00000297405 SARNPP82979 210 aaKnown RBP5.87□□□□□ -1.47
CSMD3-201ENST00000297405 MICALCLQ6ZW33 695 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.87□□□□□ -1.47
CSMD3-201ENST00000297405 MYH8P13535 1937 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 A6NNZ2 444 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 TUBB8Q3ZCM7 444 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 SH2D4BQ5SQS7 431 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 TMX4Q9H1E5 349 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-201ENST00000297405 KIF20AO95235 890 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 FAM114A1Q8IWE2 563 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 MAP9Q49MG5 647 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 MYH15Q9Y2K3 1946 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 ZBED9Q6R2W3 1325 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 IVLP07476 585 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 HSPA5P11021 654 aaKnown RBP5.87□□□□□ -1.47
CSMD3-201ENST00000297405 LIG1P18858 919 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 ROCK1Q13464 1354 aa5.87□□□□□ -1.47
CSMD3-201ENST00000297405 PDCP20941 246 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 CAVIN2O95810 425 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 STK31Q9BXU1 1019 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 TSHZ2Q9NRE2 1034 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 AKAP17AQ02040 695 aaKnown RBP5.86□□□□□ -1.47
CSMD3-201ENST00000297405 CGNL1Q0VF96 1302 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 EZRP15311 586 aaKnown RBP5.86□□□□□ -1.47
CSMD3-201ENST00000297405 DYNC1I1O14576 645 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 CFAP57Q96MR6 1250 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 MYH7P12883 1935 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 TIGD1Q96MW7 591 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 MTUS2Q5JR59 1369 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 NINLQ9Y2I6 1382 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 MIPOL1Q8TD10 442 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 CPSF2Q9P2I0 782 aaKnown RBP5.86□□□□□ -1.47
CSMD3-201ENST00000297405 DDX49Q9Y6V7 483 aaKnown RBP5.86□□□□□ -1.47
CSMD3-201ENST00000297405 PIP4K2AP48426 406 aaPredicted RBP5.86□□□□□ -1.47
CSMD3-201ENST00000297405 CHMP5Q9NZZ3 219 aa5.86□□□□□ -1.47
CSMD3-201ENST00000297405 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.85□□□□□ -1.47
CSMD3-201ENST00000297405 V9GYY5 206 aaPredicted RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms