RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 ERBINQ96RT1 1412 aa25.44■■□□□ 1.66
PDLIM3-201ENST00000284767 WASHC2AQ641Q2 1341 aa25.44■■□□□ 1.66
PDLIM3-201ENST00000284767 KDM2AQ9Y2K7 1162 aa25.43■■□□□ 1.66
PDLIM3-201ENST00000284767 C11orf95C9JLR9 678 aaPredicted RBP25.42■■□□□ 1.66
PDLIM3-201ENST00000284767 CYB5RLQ6IPT4 315 aa25.4■■□□□ 1.66
PDLIM3-201ENST00000284767 PLA2R1Q13018 1463 aa25.4■■□□□ 1.66
PDLIM3-201ENST00000284767 IQGAP3Q86VI3 1631 aa25.4■■□□□ 1.66
PDLIM3-201ENST00000284767 RTEL1-TNFRSF6BF6WH68 1400 aa25.39■■□□□ 1.65
PDLIM3-201ENST00000284767 DCAF11Q8TEB1 546 aa25.38■■□□□ 1.65
PDLIM3-201ENST00000284767 ATP7AQ04656 1500 aa25.37■■□□□ 1.65
PDLIM3-201ENST00000284767 MAGI2Q86UL8 1455 aa25.37■■□□□ 1.65
PDLIM3-201ENST00000284767 CD109Q6YHK3 1445 aa25.37■■□□□ 1.65
PDLIM3-201ENST00000284767 RGL3Q3MIN7 710 aa25.36■■□□□ 1.65
PDLIM3-201ENST00000284767 CCDC144AA2RUR9 1427 aa25.35■■□□□ 1.65
PDLIM3-201ENST00000284767 INO80Q9ULG1 1556 aaPredicted RBP25.34■■□□□ 1.65
PDLIM3-201ENST00000284767 SPATA31E1Q6ZUB1 1445 aa25.34■■□□□ 1.65
PDLIM3-201ENST00000284767 KIF3BO15066 747 aa25.3■■□□□ 1.64
PDLIM3-201ENST00000284767 UHRF1BP1Q6BDS2 1440 aa25.27■■□□□ 1.64
PDLIM3-201ENST00000284767 RBM19Q9Y4C8 960 aaKnown RBP25.27■■□□□ 1.64
PDLIM3-201ENST00000284767 USP47Q96K76 1375 aa25.27■■□□□ 1.64
PDLIM3-201ENST00000284767 CCDC7Q96M83 1385 aa25.26■■□□□ 1.63
PDLIM3-201ENST00000284767 KIDINS220Q9ULH0 1771 aa25.25■■□□□ 1.63
PDLIM3-201ENST00000284767 KIF7Q2M1P5 1343 aa25.24■■□□□ 1.63
PDLIM3-201ENST00000284767 ZNF518AQ6AHZ1 1483 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 DHX29Q7Z478 1369 aaKnown RBP25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 CARD11Q9BXL7 1154 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 E9PCH4 1651 aa25.23■■□□□ 1.63
PDLIM3-201ENST00000284767 RALGAPBQ86X10 1494 aa25.22■■□□□ 1.63
PDLIM3-201ENST00000284767 RAPGEF3O95398 923 aa25.21■■□□□ 1.63
PDLIM3-201ENST00000284767 A2MP01023 1474 aa25.21■■□□□ 1.63
PDLIM3-201ENST00000284767 DEPDC5O75140 1603 aa25.2■■□□□ 1.62
PDLIM3-201ENST00000284767 KDM5CP41229 1560 aa25.2■■□□□ 1.62
PDLIM3-201ENST00000284767 POGZQ7Z3K3 1410 aa25.19■■□□□ 1.62
PDLIM3-201ENST00000284767 POLR3GLQ9BT43 218 aa25.18■■□□□ 1.62
PDLIM3-201ENST00000284767 BCORL1Q5H9F3 1711 aa25.18■■□□□ 1.62
PDLIM3-201ENST00000284767 ATP10AO60312 1499 aa25.18■■□□□ 1.62
PDLIM3-201ENST00000284767 CNTLNQ9NXG0 1405 aa25.16■■□□□ 1.62
PDLIM3-201ENST00000284767 NBPF1Q3BBV0 1214 aa25.16■■□□□ 1.62
PDLIM3-201ENST00000284767 PRAG1Q86YV5 1406 aa25.16■■□□□ 1.62
PDLIM3-201ENST00000284767 MROH1Q8NDA8 1641 aa25.15■■□□□ 1.62
PDLIM3-201ENST00000284767 ROCK2O75116 1388 aaKnown RBP25.15■■□□□ 1.62
PDLIM3-201ENST00000284767 CFAP74Q9C0B2 1584 aa25.14■■□□□ 1.62
PDLIM3-201ENST00000284767 KANK1Q14678 1352 aa25.14■■□□□ 1.61
PDLIM3-201ENST00000284767 ST20-MTHFSA0A0A6YYL1 179 aa25.12■■□□□ 1.61
PDLIM3-201ENST00000284767 VWDEQ8N2E2 1590 aa25.12■■□□□ 1.61
PDLIM3-201ENST00000284767 TET3O43151 1660 aa25.11■■□□□ 1.61
PDLIM3-201ENST00000284767 EIF2AK4Q9P2K8 1649 aaKnown RBP25.1■■□□□ 1.61
PDLIM3-201ENST00000284767 PRDM15P57071 1507 aaPredicted RBP25.1■■□□□ 1.61
PDLIM3-201ENST00000284767 TRPM1Q7Z4N2 1603 aa25.09■■□□□ 1.61
PDLIM3-201ENST00000284767 POLR1AO95602 1720 aaPredicted RBP25.09■■□□□ 1.61
PDLIM3-201ENST00000284767 FRMPD1Q5SYB0 1578 aa25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 GGT6Q6P531 493 aa25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 MLH3Q9UHC1 1453 aa25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 SPHKAPQ2M3C7 1700 aa25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 HECW2Q9P2P5 1572 aa25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 HNRNPUQ00839 825 aaKnown RBP eCLIP25.08■■□□□ 1.61
PDLIM3-201ENST00000284767 NEO1Q92859 1461 aa25.08■■□□□ 1.6
PDLIM3-201ENST00000284767 TRPM2O94759 1503 aa25.07■■□□□ 1.6
PDLIM3-201ENST00000284767 PTPRTO14522 1441 aa25.07■■□□□ 1.6
PDLIM3-201ENST00000284767 CLTCL1P53675 1640 aa25.07■■□□□ 1.6
PDLIM3-201ENST00000284767 FAM69CQ0P6D2 419 aa25.06■■□□□ 1.6
PDLIM3-201ENST00000284767 CNGB1Q14028 1251 aaPredicted RBP25.06■■□□□ 1.6
PDLIM3-201ENST00000284767 ABCA6Q8N139 1617 aa25.06■■□□□ 1.6
PDLIM3-201ENST00000284767 MAP3K4Q9Y6R4 1608 aa25.06■■□□□ 1.6
PDLIM3-201ENST00000284767 UGGT1Q9NYU2 1555 aa25.05■■□□□ 1.6
PDLIM3-201ENST00000284767 ERICH6BQ5W0A0 696 aa25.04■■□□□ 1.6
PDLIM3-201ENST00000284767 CCDC184Q52MB2 194 aa25.02■■□□□ 1.6
PDLIM3-201ENST00000284767 CEP152O94986 1710 aa25.02■■□□□ 1.6
PDLIM3-201ENST00000284767 PPRC1Q5VV67 1664 aaKnown RBP25.01■■□□□ 1.59
PDLIM3-201ENST00000284767 PRKRIP1Q9H875 184 aaPredicted RBP25■■□□□ 1.59
PDLIM3-201ENST00000284767 EFCAB6Q5THR3 1501 aa24.99■■□□□ 1.59
PDLIM3-201ENST00000284767 FANCIQ9NVI1 1328 aa24.99■■□□□ 1.59
PDLIM3-201ENST00000284767 RNF17Q9BXT8 1623 aaKnown RBP24.97■■□□□ 1.59
PDLIM3-201ENST00000284767 YEATS2Q9ULM3 1422 aa24.97■■□□□ 1.59
PDLIM3-201ENST00000284767 CFAP65Q6ZU64 1925 aaKnown RBP24.97■■□□□ 1.59
PDLIM3-201ENST00000284767 RICTORQ6R327 1708 aa24.97■■□□□ 1.59
PDLIM3-201ENST00000284767 GPRASP1Q5JY77 1395 aa24.96■■□□□ 1.59
PDLIM3-201ENST00000284767 DIP2BQ9P265 1576 aa24.96■■□□□ 1.59
PDLIM3-201ENST00000284767 TSPOAP1O95153 1857 aa24.96■■□□□ 1.59
PDLIM3-201ENST00000284767 GLI2P10070 1586 aa24.96■■□□□ 1.59
PDLIM3-201ENST00000284767 DIP2CQ9Y2E4 1556 aa24.94■■□□□ 1.58
PDLIM3-201ENST00000284767 WASHC2CQ9Y4E1 1318 aa24.93■■□□□ 1.58
PDLIM3-201ENST00000284767 MADDQ8WXG6 1647 aa24.92■■□□□ 1.58
PDLIM3-201ENST00000284767 NPATQ14207 1427 aa24.92■■□□□ 1.58
PDLIM3-201ENST00000284767 LMTK2Q8IWU2 1503 aa24.91■■□□□ 1.58
PDLIM3-201ENST00000284767 MSH5O43196 834 aa24.91■■□□□ 1.58
PDLIM3-201ENST00000284767 ARID4BQ4LE39 1312 aaPredicted RBP24.9■■□□□ 1.58
PDLIM3-201ENST00000284767 BCL11AQ9H165 835 aa24.9■■□□□ 1.58
PDLIM3-201ENST00000284767 CHGAP10645 457 aaKnown RBP24.88■■□□□ 1.57
PDLIM3-201ENST00000284767 TESK2Q96S53 571 aa24.88■■□□□ 1.57
PDLIM3-201ENST00000284767 PPP4R2Q9NY27 417 aa24.88■■□□□ 1.57
PDLIM3-201ENST00000284767 ABCC3O15438 1527 aa24.86■■□□□ 1.57
PDLIM3-201ENST00000284767 IRX6P78412 446 aaPredicted RBP24.86■■□□□ 1.57
PDLIM3-201ENST00000284767 DISP3Q9P2K9 1392 aa24.85■■□□□ 1.57
PDLIM3-201ENST00000284767 MROH2AA6NES4 1674 aa24.85■■□□□ 1.57
PDLIM3-201ENST00000284767 LAMC1P11047 1609 aa24.85■■□□□ 1.57
PDLIM3-201ENST00000284767 ADGRF5Q8IZF2 1346 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms