RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 TRIM6-TRIM34B2RNG4 842 aa9.87□□□□□ -0.83
LIMD1-201ENST00000273317 GORABQ5T7V8 394 aa9.87□□□□□ -0.83
LIMD1-201ENST00000273317 SOGA1O94964 1423 aa9.87□□□□□ -0.83
LIMD1-201ENST00000273317 TSR1Q2NL82 804 aaKnown RBP9.86□□□□□ -0.83
LIMD1-201ENST00000273317 TPM2P07951 284 aa9.86□□□□□ -0.83
LIMD1-201ENST00000273317 RASSF8Q8NHQ8 419 aa9.86□□□□□ -0.83
LIMD1-201ENST00000273317 APBB1O00213 710 aa9.86□□□□□ -0.83
LIMD1-201ENST00000273317 WIZO95785 1651 aa9.85□□□□□ -0.83
LIMD1-201ENST00000273317 CCDC88BA6NC98 1476 aa9.85□□□□□ -0.83
LIMD1-201ENST00000273317 MYBBP1AQ9BQG0 1328 aaKnown RBP9.85□□□□□ -0.83
LIMD1-201ENST00000273317 CEP89Q96ST8 783 aa9.85□□□□□ -0.83
LIMD1-201ENST00000273317 ROCK1Q13464 1354 aa9.85□□□□□ -0.83
LIMD1-201ENST00000273317 BCL11BQ9C0K0 894 aaPredicted RBP9.84□□□□□ -0.83
LIMD1-201ENST00000273317 LRRFIP1Q32MZ4 808 aaKnown RBP9.84□□□□□ -0.83
LIMD1-201ENST00000273317 PRDM2Q13029 1718 aa9.84□□□□□ -0.83
LIMD1-201ENST00000273317 TAF7LQ5H9L4 462 aa9.84□□□□□ -0.83
LIMD1-201ENST00000273317 VSIG10Q8N0Z9 540 aa9.84□□□□□ -0.83
LIMD1-201ENST00000273317 ZBED9Q6R2W3 1325 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 FAM161AQ3B820 660 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 MPHOSPH9Q99550 1183 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 PDS5BQ9NTI5 1447 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 NGEFQ8N5V2 710 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 RSPH4AQ5TD94 716 aa9.83□□□□□ -0.84
LIMD1-201ENST00000273317 RAPGEF2Q9Y4G8 1499 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 TEX35Q5T0J7 233 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 TSHZ2Q9NRE2 1034 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 GOLGA6L19H0YKK7 550 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 H3BQV1 296 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 IFFO2Q5TF58 517 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 CGNL1Q0VF96 1302 aa9.82□□□□□ -0.84
LIMD1-201ENST00000273317 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.81□□□□□ -0.84
LIMD1-201ENST00000273317 HOOK1Q9UJC3 728 aaKnown RBP9.81□□□□□ -0.84
LIMD1-201ENST00000273317 AAMPQ13685 434 aa9.81□□□□□ -0.84
LIMD1-201ENST00000273317 CCDC144AA2RUR9 1427 aa9.81□□□□□ -0.84
LIMD1-201ENST00000273317 REC8O95072 547 aa9.81□□□□□ -0.84
LIMD1-201ENST00000273317 SF3A1Q15459 793 aaKnown RBP9.81□□□□□ -0.84
LIMD1-201ENST00000273317 TPD52L1Q16890 204 aaPredicted RBP9.8□□□□□ -0.84
LIMD1-201ENST00000273317 ANKRD20A12PQ8NF67 263 aa9.8□□□□□ -0.84
LIMD1-201ENST00000273317 MAPK8IP2Q13387 824 aaPredicted RBP9.8□□□□□ -0.84
LIMD1-201ENST00000273317 FANCIQ9NVI1 1328 aa9.8□□□□□ -0.84
LIMD1-201ENST00000273317 CALRP27797 417 aaKnown RBP9.8□□□□□ -0.84
LIMD1-201ENST00000273317 E9PSI1 815 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 CHMP3Q9Y3E7 222 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 RUFY2Q8WXA3 655 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 SMARCA4P51532 1647 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 CSB-PGBD3P0DP91 1061 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 SAFB2Q14151 953 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIMD1-201ENST00000273317 GSE1Q14687 1217 aa9.79□□□□□ -0.84
LIMD1-201ENST00000273317 EFCAB2Q5VUJ9 269 aa9.78□□□□□ -0.84
LIMD1-201ENST00000273317 SOX12O15370 315 aa9.78□□□□□ -0.84
LIMD1-201ENST00000273317 BECN2A8MW95 431 aa9.78□□□□□ -0.84
LIMD1-201ENST00000273317 STK26Q9P289 416 aa9.78□□□□□ -0.84
LIMD1-201ENST00000273317 IPO7O95373 1038 aaKnown RBP9.77□□□□□ -0.84
LIMD1-201ENST00000273317 AKAP17AQ02040 695 aaKnown RBP9.77□□□□□ -0.85
LIMD1-201ENST00000273317 FOXD4L1Q9NU39 408 aa9.77□□□□□ -0.85
LIMD1-201ENST00000273317 NOM1Q5C9Z4 860 aaKnown RBP9.77□□□□□ -0.85
LIMD1-201ENST00000273317 MTERF4Q7Z6M4 381 aaKnown RBP9.77□□□□□ -0.85
LIMD1-201ENST00000273317 ACBD3Q9H3P7 528 aa9.77□□□□□ -0.85
LIMD1-201ENST00000273317 MROH2BQ7Z745 1585 aa9.77□□□□□ -0.85
LIMD1-201ENST00000273317 ZKSCAN2Q63HK3 967 aa9.76□□□□□ -0.85
LIMD1-201ENST00000273317 PAK3O75914 559 aaPredicted RBP9.76□□□□□ -0.85
LIMD1-201ENST00000273317 CECR2Q9BXF3 1484 aa9.76□□□□□ -0.85
LIMD1-201ENST00000273317 RRP1P56182 461 aaKnown RBP9.76□□□□□ -0.85
LIMD1-201ENST00000273317 FOXD4L5Q5VV16 416 aaPredicted RBP9.76□□□□□ -0.85
LIMD1-201ENST00000273317 FOXD4L4Q8WXT5 416 aaPredicted RBP9.76□□□□□ -0.85
LIMD1-201ENST00000273317 DDX49Q9Y6V7 483 aaKnown RBP9.76□□□□□ -0.85
LIMD1-201ENST00000273317 FAM184AQ8NB25 1140 aa9.76□□□□□ -0.85
LIMD1-201ENST00000273317 DIAPH3Q9NSV4 1193 aa9.75□□□□□ -0.85
LIMD1-201ENST00000273317 AK7Q96M32 723 aa9.75□□□□□ -0.85
LIMD1-201ENST00000273317 USP47Q96K76 1375 aa9.75□□□□□ -0.85
LIMD1-201ENST00000273317 MARCH6O60337 910 aa9.75□□□□□ -0.85
LIMD1-201ENST00000273317 ZNF771Q7L3S4 317 aaPredicted RBP9.75□□□□□ -0.85
LIMD1-201ENST00000273317 CDR1P51861 262 aa9.75□□□□□ -0.85
LIMD1-201ENST00000273317 CCDC47Q96A33 483 aaKnown RBP9.75□□□□□ -0.85
LIMD1-201ENST00000273317 ARGLU1Q9NWB6 273 aaPredicted RBP9.75□□□□□ -0.85
LIMD1-201ENST00000273317 EID1Q9Y6B2 187 aa9.74□□□□□ -0.85
LIMD1-201ENST00000273317 SYNE3Q6ZMZ3 975 aa9.74□□□□□ -0.85
LIMD1-201ENST00000273317 PDE4AP27815 886 aa9.74□□□□□ -0.85
LIMD1-201ENST00000273317 CPLX2Q6PUV4 134 aaKnown RBP9.74□□□□□ -0.85
LIMD1-201ENST00000273317 CREBRFQ8IUR6 639 aa9.74□□□□□ -0.85
LIMD1-201ENST00000273317 DDX19BQ9UMR2 479 aa9.74□□□□□ -0.85
LIMD1-201ENST00000273317 ZKSCAN1P17029 563 aaPredicted RBP9.73□□□□□ -0.85
LIMD1-201ENST00000273317 SLC4A10Q6U841 1118 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 NOL8Q76FK4 1167 aaKnown RBP9.73□□□□□ -0.85
LIMD1-201ENST00000273317 FOXD1Q16676 465 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 CCAR2Q8N163 923 aaKnown RBP9.73□□□□□ -0.85
LIMD1-201ENST00000273317 TRIM29Q14134 588 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 AMOTL1Q8IY63 956 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 PES1O00541 588 aaKnown RBP9.73□□□□□ -0.85
LIMD1-201ENST00000273317 MAP7D2Q96T17 732 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 EVC2Q86UK5 1308 aa9.73□□□□□ -0.85
LIMD1-201ENST00000273317 VPS53Q5VIR6 699 aa9.72□□□□□ -0.85
LIMD1-201ENST00000273317 RNF20Q5VTR2 975 aa9.72□□□□□ -0.85
LIMD1-201ENST00000273317 ZNF330Q9Y3S2 320 aaPredicted RBP9.72□□□□□ -0.85
LIMD1-201ENST00000273317 CCDC146Q8IYE0 955 aa9.72□□□□□ -0.85
LIMD1-201ENST00000273317 FHOD3Q2V2M9 1422 aa9.72□□□□□ -0.85
LIMD1-201ENST00000273317 KANK4Q5T7N3 995 aaPredicted RBP9.72□□□□□ -0.85
LIMD1-201ENST00000273317 DHX37Q8IY37 1157 aaKnown RBP9.72□□□□□ -0.85
LIMD1-201ENST00000273317 TOMM22Q9NS69 142 aa9.72□□□□□ -0.85
LIMD1-201ENST00000273317 NUCB2P80303 420 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms