RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 STK26Q9P289 416 aa14.69□□□□□ -0.06
VPS33A-201ENST00000267199 BRPF3Q9ULD4 1205 aa14.69□□□□□ -0.06
VPS33A-201ENST00000267199 VSIG10Q8N0Z9 540 aa14.69□□□□□ -0.06
VPS33A-201ENST00000267199 MFAP1P55081 439 aaKnown RBP14.68□□□□□ -0.06
VPS33A-201ENST00000267199 TOPBP1Q92547 1522 aa14.68□□□□□ -0.06
VPS33A-201ENST00000267199 PTPRGP23470 1445 aa14.67□□□□□ -0.06
VPS33A-201ENST00000267199 ANKRD50Q9ULJ7 1429 aa14.67□□□□□ -0.06
VPS33A-201ENST00000267199 NAIPQ13075 1403 aa14.66□□□□□ -0.06
VPS33A-201ENST00000267199 RSPH6AQ9H0K4 717 aa14.66□□□□□ -0.06
VPS33A-201ENST00000267199 PLEKHG5O94827 1062 aa14.66□□□□□ -0.06
VPS33A-201ENST00000267199 FAM161AQ3B820 660 aa14.66□□□□□ -0.06
VPS33A-201ENST00000267199 NFKBIBQ15653 356 aa14.65□□□□□ -0.06
VPS33A-201ENST00000267199 FOXD4L1Q9NU39 408 aa14.65□□□□□ -0.06
VPS33A-201ENST00000267199 PRKCSHP14314 528 aaPredicted RBP14.65□□□□□ -0.06
VPS33A-201ENST00000267199 HSP90AA2PQ14568 343 aaPredicted RBP14.65□□□□□ -0.06
VPS33A-201ENST00000267199 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.65□□□□□ -0.06
VPS33A-201ENST00000267199 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
VPS33A-201ENST00000267199 EIF3AQ14152 1382 aaKnown RBP14.64□□□□□ -0.07
VPS33A-201ENST00000267199 C14orf37Q86TY3 774 aa14.64□□□□□ -0.07
VPS33A-201ENST00000267199 PRDM2Q13029 1718 aa14.63□□□□□ -0.07
VPS33A-201ENST00000267199 PCF11O94913 1555 aaKnown RBP14.63□□□□□ -0.07
VPS33A-201ENST00000267199 CASC1Q6TDU7 716 aa14.62□□□□□ -0.07
VPS33A-201ENST00000267199 TRAK1Q9UPV9 953 aa14.62□□□□□ -0.07
VPS33A-201ENST00000267199 CENPJQ9HC77 1338 aaPredicted RBP14.62□□□□□ -0.07
VPS33A-201ENST00000267199 AMER1Q5JTC6 1135 aaPredicted RBP14.61□□□□□ -0.07
VPS33A-201ENST00000267199 RRP7AQ9Y3A4 280 aaKnown RBP14.61□□□□□ -0.07
VPS33A-201ENST00000267199 EHBP1L1Q8N3D4 1523 aa14.61□□□□□ -0.07
VPS33A-201ENST00000267199 GBP4Q96PP9 640 aa14.61□□□□□ -0.07
VPS33A-201ENST00000267199 NUTM2DQ5VT03 806 aaPredicted RBP14.61□□□□□ -0.07
VPS33A-201ENST00000267199 CENPQQ7L2Z9 268 aaPredicted RBP14.61□□□□□ -0.07
VPS33A-201ENST00000267199 APAF1O14727 1248 aa14.61□□□□□ -0.07
VPS33A-201ENST00000267199 APBB1O00213 710 aa14.6□□□□□ -0.07
VPS33A-201ENST00000267199 RWDD1Q9H446 243 aaPredicted RBP14.6□□□□□ -0.07
VPS33A-201ENST00000267199 MIA2Q96PC5 1412 aa14.6□□□□□ -0.07
VPS33A-201ENST00000267199 CHMP4BQ9H444 224 aaKnown RBP14.59□□□□□ -0.07
VPS33A-201ENST00000267199 AKNAQ7Z591 1439 aa14.59□□□□□ -0.07
VPS33A-201ENST00000267199 BCL2L13Q9BXK5 485 aa14.59□□□□□ -0.07
VPS33A-201ENST00000267199 ITPRIPQ8IWB1 547 aa14.59□□□□□ -0.07
VPS33A-201ENST00000267199 C11orf95C9JLR9 678 aaPredicted RBP14.58□□□□□ -0.07
VPS33A-201ENST00000267199 GRIN2BQ13224 1484 aa14.58□□□□□ -0.08
VPS33A-201ENST00000267199 MAP3K1Q13233 1512 aa14.58□□□□□ -0.08
VPS33A-201ENST00000267199 MLECQ14165 292 aa14.58□□□□□ -0.08
VPS33A-201ENST00000267199 CDCA7LQ96GN5 454 aa14.58□□□□□ -0.08
VPS33A-201ENST00000267199 SOX12O15370 315 aa14.57□□□□□ -0.08
VPS33A-201ENST00000267199 UNC13AQ9UPW8 1703 aa14.57□□□□□ -0.08
VPS33A-201ENST00000267199 SMC4Q9NTJ3 1288 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 NBPF1Q3BBV0 1214 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 PMFBP1Q8TBY8 1022 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 BRD4O60885 1362 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-201ENST00000267199 IPO8O15397 1037 aaKnown RBP14.56□□□□□ -0.08
VPS33A-201ENST00000267199 PNISRQ8TF01 805 aaKnown RBP14.56□□□□□ -0.08
VPS33A-201ENST00000267199 COG6Q9Y2V7 657 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 DNMBPQ6XZF7 1577 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 PRG4Q92954 1404 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-201ENST00000267199 HDGFL2Q7Z4V5 671 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-201ENST00000267199 ABCA10Q8WWZ4 1543 aa14.56□□□□□ -0.08
VPS33A-201ENST00000267199 CC2D2AQ9P2K1 1620 aa14.55□□□□□ -0.08
VPS33A-201ENST00000267199 BIVM-ERCC5R4GMW8 1640 aa14.55□□□□□ -0.08
VPS33A-201ENST00000267199 FRAT2O75474 233 aaPredicted RBP14.55□□□□□ -0.08
VPS33A-201ENST00000267199 KIAA1107Q9UPP5 1409 aa14.54□□□□□ -0.08
VPS33A-201ENST00000267199 SUPT6HQ7KZ85 1726 aaKnown RBP14.54□□□□□ -0.08
VPS33A-201ENST00000267199 WASHC2CQ9Y4E1 1318 aa14.53□□□□□ -0.08
VPS33A-201ENST00000267199 E9PSI1 815 aa14.53□□□□□ -0.08
VPS33A-201ENST00000267199 CDK13Q14004 1512 aaKnown RBP14.53□□□□□ -0.08
VPS33A-201ENST00000267199 DAPK1P53355 1430 aa14.53□□□□□ -0.08
VPS33A-201ENST00000267199 ADAMTS8Q9UP79 889 aa14.53□□□□□ -0.08
VPS33A-201ENST00000267199 EPRSP07814 1512 aaKnown RBP14.51□□□□□ -0.09
VPS33A-201ENST00000267199 MAPKBP1O60336 1514 aa14.5□□□□□ -0.09
VPS33A-201ENST00000267199 TROQ12816 1431 aaPredicted RBP14.5□□□□□ -0.09
VPS33A-201ENST00000267199 CDK11BP21127 795 aaKnown RBP14.5□□□□□ -0.09
VPS33A-201ENST00000267199 CGNL1Q0VF96 1302 aa14.49□□□□□ -0.09
VPS33A-201ENST00000267199 TERF2IPQ9NYB0 399 aa14.49□□□□□ -0.09
VPS33A-201ENST00000267199 CALD1Q05682 793 aaKnown RBP14.49□□□□□ -0.09
VPS33A-201ENST00000267199 CHAF1AQ13111 956 aaPredicted RBP14.49□□□□□ -0.09
VPS33A-201ENST00000267199 HECW1Q76N89 1606 aa14.48□□□□□ -0.09
VPS33A-201ENST00000267199 TAOK2Q9UL54 1235 aa14.48□□□□□ -0.09
VPS33A-201ENST00000267199 ANKRD30BQ9BXX2 1392 aa14.48□□□□□ -0.09
VPS33A-201ENST00000267199 FOXD4L5Q5VV16 416 aaPredicted RBP14.48□□□□□ -0.09
VPS33A-201ENST00000267199 FOXD4L4Q8WXT5 416 aaPredicted RBP14.48□□□□□ -0.09
VPS33A-201ENST00000267199 BACH2Q9BYV9 841 aa14.48□□□□□ -0.09
VPS33A-201ENST00000267199 C9orf84Q5VXU9 1444 aa14.47□□□□□ -0.09
VPS33A-201ENST00000267199 SKAP1Q86WV1 359 aa14.47□□□□□ -0.09
VPS33A-201ENST00000267199 ZRSR1Q15695 479 aaKnown RBP14.46□□□□□ -0.09
VPS33A-201ENST00000267199 DNAJC5BQ9UF47 199 aa14.46□□□□□ -0.09
VPS33A-201ENST00000267199 DDX49Q9Y6V7 483 aaKnown RBP14.46□□□□□ -0.1
VPS33A-201ENST00000267199 KIAA2012Q0VF49 1180 aa14.45□□□□□ -0.1
VPS33A-201ENST00000267199 SMG6Q86US8 1419 aaKnown RBP14.45□□□□□ -0.1
VPS33A-201ENST00000267199 PTPN23Q9H3S7 1636 aa14.45□□□□□ -0.1
VPS33A-201ENST00000267199 NOL8Q76FK4 1167 aaKnown RBP14.45□□□□□ -0.1
VPS33A-201ENST00000267199 AFAP1Q8N556 730 aa14.45□□□□□ -0.1
VPS33A-201ENST00000267199 DDX11L8A8MPP1 907 aa14.45□□□□□ -0.1
VPS33A-201ENST00000267199 ROCK1Q13464 1354 aa14.45□□□□□ -0.1
VPS33A-201ENST00000267199 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.44□□□□□ -0.1
VPS33A-201ENST00000267199 PTPRKQ15262 1439 aa14.44□□□□□ -0.1
VPS33A-201ENST00000267199 DRC7Q8IY82 874 aa14.44□□□□□ -0.1
VPS33A-201ENST00000267199 PPP2R1AP30153 589 aa14.43□□□□□ -0.1
VPS33A-201ENST00000267199 GOLGA6L4A6NEF3 574 aa14.43□□□□□ -0.1
VPS33A-201ENST00000267199 HAP1P54257 671 aaPredicted RBP14.43□□□□□ -0.1
VPS33A-201ENST00000267199 ZKSCAN2Q63HK3 967 aa14.43□□□□□ -0.1
VPS33A-201ENST00000267199 KCNJ4P48050 445 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms