RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 PDE3BQ13370 1112 aa19.62■□□□□ 0.73
TIMP3-201ENST00000266085 EFCAB5A4FU69 1503 aa19.6■□□□□ 0.73
TIMP3-201ENST00000266085 ARHGAP5Q13017 1502 aa19.6■□□□□ 0.73
TIMP3-201ENST00000266085 NOP58Q9Y2X3 529 aaKnown RBP19.6■□□□□ 0.73
TIMP3-201ENST00000266085 CGNL1Q0VF96 1302 aa19.59■□□□□ 0.73
TIMP3-201ENST00000266085 APBB1O00213 710 aa19.59■□□□□ 0.73
TIMP3-201ENST00000266085 KCNJ4P48050 445 aa19.59■□□□□ 0.73
TIMP3-201ENST00000266085 RRP7AQ9Y3A4 280 aaKnown RBP19.58■□□□□ 0.73
TIMP3-201ENST00000266085 ITPRIPQ8IWB1 547 aa19.58■□□□□ 0.73
TIMP3-201ENST00000266085 SMC4Q9NTJ3 1288 aa19.58■□□□□ 0.72
TIMP3-201ENST00000266085 RRBP1Q9P2E9 1410 aaKnown RBP19.57■□□□□ 0.72
TIMP3-201ENST00000266085 STAC3Q96MF2 364 aa19.57■□□□□ 0.72
TIMP3-201ENST00000266085 CLUAP1Q96AJ1 413 aa19.57■□□□□ 0.72
TIMP3-201ENST00000266085 TROQ12816 1431 aaPredicted RBP19.57■□□□□ 0.72
TIMP3-201ENST00000266085 TRIM44Q96DX7 344 aaPredicted RBP19.57■□□□□ 0.72
TIMP3-201ENST00000266085 ZNF330Q9Y3S2 320 aaPredicted RBP19.56■□□□□ 0.72
TIMP3-201ENST00000266085 HSP90AB1P08238 724 aaKnown RBP19.56■□□□□ 0.72
TIMP3-201ENST00000266085 CHMP4AQ9BY43 222 aa19.56■□□□□ 0.72
TIMP3-201ENST00000266085 FGD1P98174 961 aa19.56■□□□□ 0.72
TIMP3-201ENST00000266085 COG3Q96JB2 828 aa19.56■□□□□ 0.72
TIMP3-201ENST00000266085 STK31Q9BXU1 1019 aa19.56■□□□□ 0.72
TIMP3-201ENST00000266085 ABCA10Q8WWZ4 1543 aa19.55■□□□□ 0.72
TIMP3-201ENST00000266085 RWDD1Q9H446 243 aaPredicted RBP19.55■□□□□ 0.72
TIMP3-201ENST00000266085 CENPJQ9HC77 1338 aaPredicted RBP19.55■□□□□ 0.72
TIMP3-201ENST00000266085 ZRSR1Q15695 479 aaKnown RBP19.53■□□□□ 0.72
TIMP3-201ENST00000266085 KIAA0586Q9BVV6 1533 aa19.53■□□□□ 0.72
TIMP3-201ENST00000266085 TMEM132EQ6IEE7 984 aa19.53■□□□□ 0.72
TIMP3-201ENST00000266085 CFAP44Q96MT7 982 aa19.53■□□□□ 0.72
TIMP3-201ENST00000266085 LMOD3Q0VAK6 560 aa19.52■□□□□ 0.72
TIMP3-201ENST00000266085 RBM19Q9Y4C8 960 aaKnown RBP19.51■□□□□ 0.71
TIMP3-201ENST00000266085 LAMC3Q9Y6N6 1575 aa19.51■□□□□ 0.71
TIMP3-201ENST00000266085 KIF7Q2M1P5 1343 aa19.51■□□□□ 0.71
TIMP3-201ENST00000266085 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.51■□□□□ 0.71
TIMP3-201ENST00000266085 CCDC9Q9Y3X0 531 aaKnown RBP19.51■□□□□ 0.71
TIMP3-201ENST00000266085 MIA2Q96PC5 1412 aa19.51■□□□□ 0.71
TIMP3-201ENST00000266085 HSCBQ8IWL3 235 aa19.5■□□□□ 0.71
TIMP3-201ENST00000266085 SCAPERQ9BY12 1400 aa19.49■□□□□ 0.71
TIMP3-201ENST00000266085 TPRNQ4KMQ1 711 aa19.49■□□□□ 0.71
TIMP3-201ENST00000266085 CFAP70Q5T0N1 1121 aa19.49■□□□□ 0.71
TIMP3-201ENST00000266085 TCERG1O14776 1098 aaKnown RBP19.49■□□□□ 0.71
TIMP3-201ENST00000266085 C9orf84Q5VXU9 1444 aa19.48■□□□□ 0.71
TIMP3-201ENST00000266085 CCDC7Q96M83 1385 aa19.48■□□□□ 0.71
TIMP3-201ENST00000266085 EHBP1L1Q8N3D4 1523 aa19.47■□□□□ 0.71
TIMP3-201ENST00000266085 APAF1O14727 1248 aa19.47■□□□□ 0.71
TIMP3-201ENST00000266085 MCCP23508 829 aa19.47■□□□□ 0.71
TIMP3-201ENST00000266085 ELL2O00472 640 aaPredicted RBP19.47■□□□□ 0.71
TIMP3-201ENST00000266085 RAPGEF3O95398 923 aa19.47■□□□□ 0.71
TIMP3-201ENST00000266085 SLC4A10Q6U841 1118 aa19.46■□□□□ 0.71
TIMP3-201ENST00000266085 PMFBP1Q8TBY8 1022 aa19.46■□□□□ 0.71
TIMP3-201ENST00000266085 TAOK2Q9UL54 1235 aa19.46■□□□□ 0.71
TIMP3-201ENST00000266085 TIAM1Q13009 1591 aa19.44■□□□□ 0.7
TIMP3-201ENST00000266085 BCL2L13Q9BXK5 485 aa19.44■□□□□ 0.7
TIMP3-201ENST00000266085 PTMAP06454 111 aaKnown RBP19.43■□□□□ 0.7
TIMP3-201ENST00000266085 NAP1L2Q9ULW6 460 aaPredicted RBP19.43■□□□□ 0.7
TIMP3-201ENST00000266085 NBPF1Q3BBV0 1214 aa19.42■□□□□ 0.7
TIMP3-201ENST00000266085 ZBED9Q6R2W3 1325 aa19.42■□□□□ 0.7
TIMP3-201ENST00000266085 HFM1A2PYH4 1435 aa19.41■□□□□ 0.7
TIMP3-201ENST00000266085 EPRSP07814 1512 aaKnown RBP19.41■□□□□ 0.7
TIMP3-201ENST00000266085 CDK13Q14004 1512 aaKnown RBP19.41■□□□□ 0.7
TIMP3-201ENST00000266085 DIAPH1O60610 1272 aaKnown RBP19.4■□□□□ 0.7
TIMP3-201ENST00000266085 CABP2Q9NPB3 220 aa19.4■□□□□ 0.7
TIMP3-201ENST00000266085 PLEKHH2Q8IVE3 1493 aa19.4■□□□□ 0.7
TIMP3-201ENST00000266085 HDAC5Q9UQL6 1122 aa19.4■□□□□ 0.7
TIMP3-201ENST00000266085 CDK11BP21127 795 aaKnown RBP19.4■□□□□ 0.7
TIMP3-201ENST00000266085 WASHC2AQ641Q2 1341 aa19.4■□□□□ 0.7
TIMP3-201ENST00000266085 HECW1Q76N89 1606 aa19.4■□□□□ 0.7
TIMP3-201ENST00000266085 HMMRO75330 724 aa19.39■□□□□ 0.7
TIMP3-201ENST00000266085 PSME1Q06323 249 aa19.39■□□□□ 0.69
TIMP3-201ENST00000266085 KIAA1211Q6ZU35 1233 aa19.39■□□□□ 0.69
TIMP3-201ENST00000266085 GGNBP2Q9H3C7 697 aa19.39■□□□□ 0.69
TIMP3-201ENST00000266085 PEG3Q9GZU2 1588 aa19.39■□□□□ 0.69
TIMP3-201ENST00000266085 E9PSI1 815 aa19.39■□□□□ 0.69
TIMP3-201ENST00000266085 NBPF8Q3BBV2 869 aa19.37■□□□□ 0.69
TIMP3-201ENST00000266085 KIAA1107Q9UPP5 1409 aa19.37■□□□□ 0.69
TIMP3-201ENST00000266085 PLIN1O60240 522 aa19.37■□□□□ 0.69
TIMP3-201ENST00000266085 IQGAP2Q13576 1575 aa19.37■□□□□ 0.69
TIMP3-201ENST00000266085 URB2Q14146 1524 aaKnown RBP19.37■□□□□ 0.69
TIMP3-201ENST00000266085 TXNDC2Q86VQ3 553 aa19.36■□□□□ 0.69
TIMP3-201ENST00000266085 DAPK1P53355 1430 aa19.35■□□□□ 0.69
TIMP3-201ENST00000266085 SPRYD3Q8NCJ5 442 aa19.35■□□□□ 0.69
TIMP3-201ENST00000266085 CHMP3Q9Y3E7 222 aa19.35■□□□□ 0.69
TIMP3-201ENST00000266085 TEFQ10587 303 aa19.35■□□□□ 0.69
TIMP3-201ENST00000266085 PLB1Q6P1J6 1458 aa19.34■□□□□ 0.69
TIMP3-201ENST00000266085 GOLGA6L4A6NEF3 574 aa19.34■□□□□ 0.69
TIMP3-201ENST00000266085 NGEFQ8N5V2 710 aa19.34■□□□□ 0.69
TIMP3-201ENST00000266085 C1orf141Q5JVX7 400 aa19.33■□□□□ 0.69
TIMP3-201ENST00000266085 GRIN2AQ12879 1464 aa19.33■□□□□ 0.68
TIMP3-201ENST00000266085 PLCB2Q00722 1185 aa19.32■□□□□ 0.68
TIMP3-201ENST00000266085 SLC52A1Q9NWF4 448 aa19.32■□□□□ 0.68
TIMP3-201ENST00000266085 RIPK4P57078 832 aa19.32■□□□□ 0.68
TIMP3-201ENST00000266085 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
TIMP3-201ENST00000266085 CNTLNQ9NXG0 1405 aa19.31■□□□□ 0.68
TIMP3-201ENST00000266085 EVA1CP58658 441 aa19.31■□□□□ 0.68
TIMP3-201ENST00000266085 ZKSCAN2Q63HK3 967 aa19.3■□□□□ 0.68
TIMP3-201ENST00000266085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.3■□□□□ 0.68
TIMP3-201ENST00000266085 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
TIMP3-201ENST00000266085 MAGI1Q96QZ7 1491 aaPredicted RBP19.29■□□□□ 0.68
TIMP3-201ENST00000266085 TAF7LQ5H9L4 462 aa19.29■□□□□ 0.68
TIMP3-201ENST00000266085 GORABQ5T7V8 394 aa19.29■□□□□ 0.68
TIMP3-201ENST00000266085 PRAM1Q96QH2 718 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms