RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 STK31Q9BXU1 1019 aa17.71■□□□□ 0.43
CDH3-201ENST00000264012 MCCP23508 829 aa17.71■□□□□ 0.43
CDH3-201ENST00000264012 PMFBP1Q8TBY8 1022 aa17.71■□□□□ 0.43
CDH3-201ENST00000264012 EVC2Q86UK5 1308 aa17.71■□□□□ 0.43
CDH3-201ENST00000264012 PRXQ9BXM0 1461 aa17.7■□□□□ 0.42
CDH3-201ENST00000264012 RRP7AQ9Y3A4 280 aaKnown RBP17.7■□□□□ 0.42
CDH3-201ENST00000264012 AMPHP49418 695 aa17.69■□□□□ 0.42
CDH3-201ENST00000264012 CGNL1Q0VF96 1302 aa17.69■□□□□ 0.42
CDH3-201ENST00000264012 LMOD3Q0VAK6 560 aa17.69■□□□□ 0.42
CDH3-201ENST00000264012 SPRYD3Q8NCJ5 442 aa17.69■□□□□ 0.42
CDH3-201ENST00000264012 CHMP4AQ9BY43 222 aa17.69■□□□□ 0.42
CDH3-201ENST00000264012 TAOK2Q9UL54 1235 aa17.68■□□□□ 0.42
CDH3-201ENST00000264012 NAP1L2Q9ULW6 460 aaPredicted RBP17.68■□□□□ 0.42
CDH3-201ENST00000264012 PRDM2Q13029 1718 aa17.68■□□□□ 0.42
CDH3-201ENST00000264012 ZBED9Q6R2W3 1325 aa17.67■□□□□ 0.42
CDH3-201ENST00000264012 MINK1Q8N4C8 1332 aaPredicted RBP17.67■□□□□ 0.42
CDH3-201ENST00000264012 HMGXB3Q12766 1538 aa17.67■□□□□ 0.42
CDH3-201ENST00000264012 TOP2BQ02880 1626 aa17.66■□□□□ 0.42
CDH3-201ENST00000264012 RRBP1Q9P2E9 1410 aaKnown RBP17.66■□□□□ 0.42
CDH3-201ENST00000264012 LTV1Q96GA3 475 aaPredicted RBP17.65■□□□□ 0.42
CDH3-201ENST00000264012 KIF7Q2M1P5 1343 aa17.64■□□□□ 0.42
CDH3-201ENST00000264012 TOPBP1Q92547 1522 aa17.64■□□□□ 0.42
CDH3-201ENST00000264012 DEKP35659 375 aaKnown RBP17.64■□□□□ 0.41
CDH3-201ENST00000264012 CCDC7Q96M83 1385 aa17.64■□□□□ 0.41
CDH3-201ENST00000264012 CDK11BP21127 795 aaKnown RBP17.64■□□□□ 0.41
CDH3-201ENST00000264012 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
CDH3-201ENST00000264012 STAC3Q96MF2 364 aa17.63■□□□□ 0.41
CDH3-201ENST00000264012 PLCB2Q00722 1185 aa17.62■□□□□ 0.41
CDH3-201ENST00000264012 ZNF330Q9Y3S2 320 aaPredicted RBP17.62■□□□□ 0.41
CDH3-201ENST00000264012 COG3Q96JB2 828 aa17.62■□□□□ 0.41
CDH3-201ENST00000264012 KIAA1211Q6ZU35 1233 aa17.62■□□□□ 0.41
CDH3-201ENST00000264012 MRC2Q9UBG0 1479 aa17.62■□□□□ 0.41
CDH3-201ENST00000264012 SLC4A10Q6U841 1118 aa17.62■□□□□ 0.41
CDH3-201ENST00000264012 AFAP1Q8N556 730 aa17.61■□□□□ 0.41
CDH3-201ENST00000264012 CC2D2AQ9P2K1 1620 aa17.61■□□□□ 0.41
CDH3-201ENST00000264012 E9PSI1 815 aa17.61■□□□□ 0.41
CDH3-201ENST00000264012 APAF1O14727 1248 aa17.61■□□□□ 0.41
CDH3-201ENST00000264012 HMMRO75330 724 aa17.61■□□□□ 0.41
CDH3-201ENST00000264012 FAM69CQ0P6D2 419 aa17.6■□□□□ 0.41
CDH3-201ENST00000264012 EFCAB5A4FU69 1503 aa17.6■□□□□ 0.41
CDH3-201ENST00000264012 PRG4Q92954 1404 aaPredicted RBP17.6■□□□□ 0.41
CDH3-201ENST00000264012 GOLGA6L4A6NEF3 574 aa17.6■□□□□ 0.41
CDH3-201ENST00000264012 SYNJ2O15056 1496 aa17.59■□□□□ 0.41
CDH3-201ENST00000264012 PLIN1O60240 522 aa17.59■□□□□ 0.41
CDH3-201ENST00000264012 BCL2L13Q9BXK5 485 aa17.59■□□□□ 0.41
CDH3-201ENST00000264012 IFT140Q96RY7 1462 aa17.58■□□□□ 0.41
CDH3-201ENST00000264012 MFAP1P55081 439 aaKnown RBP17.58■□□□□ 0.4
CDH3-201ENST00000264012 DNTTIP2Q5QJE6 756 aaKnown RBP17.58■□□□□ 0.4
CDH3-201ENST00000264012 SLKQ9H2G2 1235 aaPredicted RBP17.58■□□□□ 0.4
CDH3-201ENST00000264012 RRP1P56182 461 aaKnown RBP17.58■□□□□ 0.4
CDH3-201ENST00000264012 ELL2O00472 640 aaPredicted RBP17.57■□□□□ 0.4
CDH3-201ENST00000264012 HDAC5Q9UQL6 1122 aa17.57■□□□□ 0.4
CDH3-201ENST00000264012 ARHGAP5Q13017 1502 aa17.56■□□□□ 0.4
CDH3-201ENST00000264012 EXOC6Q8TAG9 804 aa17.55■□□□□ 0.4
CDH3-201ENST00000264012 MIA2Q96PC5 1412 aa17.55■□□□□ 0.4
CDH3-201ENST00000264012 WASHC2AQ641Q2 1341 aa17.54■□□□□ 0.4
CDH3-201ENST00000264012 CNTLNQ9NXG0 1405 aa17.54■□□□□ 0.4
CDH3-201ENST00000264012 IPO9Q96P70 1041 aaKnown RBP17.53■□□□□ 0.4
CDH3-201ENST00000264012 ZKSCAN2Q63HK3 967 aa17.53■□□□□ 0.4
CDH3-201ENST00000264012 DIAPH1O60610 1272 aaKnown RBP17.52■□□□□ 0.4
CDH3-201ENST00000264012 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.4
CDH3-201ENST00000264012 EHBP1L1Q8N3D4 1523 aa17.52■□□□□ 0.4
CDH3-201ENST00000264012 NGEFQ8N5V2 710 aa17.52■□□□□ 0.39
CDH3-201ENST00000264012 CRBNQ96SW2 442 aa17.52■□□□□ 0.39
CDH3-201ENST00000264012 TRIM6-TRIM34B2RNG4 842 aa17.51■□□□□ 0.39
CDH3-201ENST00000264012 RTN4Q9NQC3 1192 aaKnown RBP17.51■□□□□ 0.39
CDH3-201ENST00000264012 GBP4Q96PP9 640 aa17.51■□□□□ 0.39
CDH3-201ENST00000264012 CHMP3Q9Y3E7 222 aa17.51■□□□□ 0.39
CDH3-201ENST00000264012 TROQ12816 1431 aaPredicted RBP17.5■□□□□ 0.39
CDH3-201ENST00000264012 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.5■□□□□ 0.39
CDH3-201ENST00000264012 COG6Q9Y2V7 657 aa17.5■□□□□ 0.39
CDH3-201ENST00000264012 L1TD1Q5T7N2 865 aaKnown RBP17.5■□□□□ 0.39
CDH3-201ENST00000264012 TMEM132EQ6IEE7 984 aa17.5■□□□□ 0.39
CDH3-201ENST00000264012 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
CDH3-201ENST00000264012 GPATCH3Q96I76 525 aa17.49■□□□□ 0.39
CDH3-201ENST00000264012 SNAPC4Q5SXM2 1469 aa17.49■□□□□ 0.39
CDH3-201ENST00000264012 TIAM1Q13009 1591 aa17.48■□□□□ 0.39
CDH3-201ENST00000264012 C9orf84Q5VXU9 1444 aa17.48■□□□□ 0.39
CDH3-201ENST00000264012 HFM1A2PYH4 1435 aa17.48■□□□□ 0.39
CDH3-201ENST00000264012 GORABQ5T7V8 394 aa17.48■□□□□ 0.39
CDH3-201ENST00000264012 CFAP70Q5T0N1 1121 aa17.47■□□□□ 0.39
CDH3-201ENST00000264012 CCDC9Q9Y3X0 531 aaKnown RBP17.47■□□□□ 0.39
CDH3-201ENST00000264012 RIPK4P57078 832 aa17.46■□□□□ 0.39
CDH3-201ENST00000264012 RUNDC1Q96C34 613 aa17.46■□□□□ 0.39
CDH3-201ENST00000264012 TAF7LQ5H9L4 462 aa17.45■□□□□ 0.38
CDH3-201ENST00000264012 GOLGA6L6A8MZA4 724 aa17.45■□□□□ 0.38
CDH3-201ENST00000264012 PDE4AP27815 886 aa17.45■□□□□ 0.38
CDH3-201ENST00000264012 NAP1L5Q96NT1 182 aaPredicted RBP17.45■□□□□ 0.38
CDH3-201ENST00000264012 KIAA1107Q9UPP5 1409 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 TEFQ10587 303 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 GGNBP2Q9H3C7 697 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 CABP2Q9NPB3 220 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 NBPF1Q3BBV0 1214 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 C1orf141Q5JVX7 400 aa17.44■□□□□ 0.38
CDH3-201ENST00000264012 NBPF8Q3BBV2 869 aa17.43■□□□□ 0.38
CDH3-201ENST00000264012 GZF1Q9H116 711 aaPredicted RBP17.43■□□□□ 0.38
CDH3-201ENST00000264012 FAM161AQ3B820 660 aa17.43■□□□□ 0.38
CDH3-201ENST00000264012 TULP1O00294 542 aaPredicted RBP17.43■□□□□ 0.38
CDH3-201ENST00000264012 ANKRD45Q5TZF3 282 aa17.43■□□□□ 0.38
CDH3-201ENST00000264012 NRDCO43847 1150 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms