RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 KIAA0556O60303 1618 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 RAPGEF6Q8TEU7 1601 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 NLRP13Q86W25 1043 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 IPO9Q96P70 1041 aaKnown RBP16.79■□□□□ 0.28
LIG1-201ENST00000263274 CYB5RLQ6IPT4 315 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 SKAP1Q86WV1 359 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 KTN1Q86UP2 1357 aaKnown RBP16.79■□□□□ 0.28
LIG1-201ENST00000263274 C9orf84Q5VXU9 1444 aa16.79■□□□□ 0.28
LIG1-201ENST00000263274 PANK3Q9H999 370 aa16.78■□□□□ 0.28
LIG1-201ENST00000263274 ARID4BQ4LE39 1312 aaPredicted RBP16.76■□□□□ 0.27
LIG1-201ENST00000263274 SYNJ2O15056 1496 aa16.75■□□□□ 0.27
LIG1-201ENST00000263274 RTN4Q9NQC3 1192 aaKnown RBP16.75■□□□□ 0.27
LIG1-201ENST00000263274 KIF14Q15058 1648 aa16.75■□□□□ 0.27
LIG1-201ENST00000263274 DAXXQ9UER7 740 aaPredicted RBP16.75■□□□□ 0.27
LIG1-201ENST00000263274 BCORL1Q5H9F3 1711 aa16.74■□□□□ 0.27
LIG1-201ENST00000263274 CCDC144AA2RUR9 1427 aa16.73■□□□□ 0.27
LIG1-201ENST00000263274 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
LIG1-201ENST00000263274 MAGI1Q96QZ7 1491 aaPredicted RBP16.72■□□□□ 0.27
LIG1-201ENST00000263274 PDE4AP27815 886 aa16.71■□□□□ 0.26
LIG1-201ENST00000263274 WDR43Q15061 677 aaKnown RBP eCLIP16.71■□□□□ 0.262e-6■■■■■ 54.5
LIG1-201ENST00000263274 TMF1P82094 1093 aa16.7■□□□□ 0.26
LIG1-201ENST00000263274 CRBNQ96SW2 442 aa16.7■□□□□ 0.26
LIG1-201ENST00000263274 KNSTRNQ9Y448 316 aa16.69■□□□□ 0.26
LIG1-201ENST00000263274 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.68■□□□□ 0.26
LIG1-201ENST00000263274 RNF123Q5XPI4 1314 aa16.67■□□□□ 0.26
LIG1-201ENST00000263274 PTPRGP23470 1445 aa16.67■□□□□ 0.26
LIG1-201ENST00000263274 TCERG1O14776 1098 aaKnown RBP16.66■□□□□ 0.26
LIG1-201ENST00000263274 RALGAPBQ86X10 1494 aa16.66■□□□□ 0.26
LIG1-201ENST00000263274 ATP10BO94823 1461 aa16.66■□□□□ 0.26
LIG1-201ENST00000263274 NEFMP07197 916 aa16.66■□□□□ 0.26
LIG1-201ENST00000263274 ADAMTS8Q9UP79 889 aa16.66■□□□□ 0.26
LIG1-201ENST00000263274 MBD5Q9P267 1494 aa16.64■□□□□ 0.26
LIG1-201ENST00000263274 PDE3BQ13370 1112 aa16.64■□□□□ 0.25
LIG1-201ENST00000263274 CCDC146Q8IYE0 955 aa16.64■□□□□ 0.25
LIG1-201ENST00000263274 KDM5CP41229 1560 aa16.64■□□□□ 0.25
LIG1-201ENST00000263274 RGS3P49796 1198 aa16.63■□□□□ 0.25
LIG1-201ENST00000263274 SLC4A3P48751 1232 aa16.63■□□□□ 0.25
LIG1-201ENST00000263274 C20orf194Q5TEA3 1177 aa16.63■□□□□ 0.25
LIG1-201ENST00000263274 PER1O15534 1290 aaPredicted RBP16.62■□□□□ 0.25
LIG1-201ENST00000263274 DISP3Q9P2K9 1392 aa16.62■□□□□ 0.25
LIG1-201ENST00000263274 ADGRL2O95490 1459 aa16.62■□□□□ 0.25
LIG1-201ENST00000263274 ITSN2Q9NZM3 1697 aa16.62■□□□□ 0.25
LIG1-201ENST00000263274 LRPPRCP42704 1394 aaKnown RBP16.61■□□□□ 0.25
LIG1-201ENST00000263274 SENP3Q9H4L4 574 aaPredicted RBP16.6■□□□□ 0.25
LIG1-201ENST00000263274 UHRF1BP1Q6BDS2 1440 aa16.6■□□□□ 0.25
LIG1-201ENST00000263274 CHD1O14646 1710 aa16.59■□□□□ 0.25
LIG1-201ENST00000263274 CEP170Q5SW79 1584 aa16.59■□□□□ 0.25
LIG1-201ENST00000263274 CHGAP10645 457 aaKnown RBP16.59■□□□□ 0.25
LIG1-201ENST00000263274 RSPH4AQ5TD94 716 aa16.58■□□□□ 0.25
LIG1-201ENST00000263274 NEUROD2Q15784 382 aa16.58■□□□□ 0.24
LIG1-201ENST00000263274 BACH2Q9BYV9 841 aa16.58■□□□□ 0.24
LIG1-201ENST00000263274 TNNT2P45379 298 aaPredicted RBP16.57■□□□□ 0.24
LIG1-201ENST00000263274 TESK2Q96S53 571 aa16.57■□□□□ 0.24
LIG1-201ENST00000263274 IL27Q8NEV9 243 aa16.57■□□□□ 0.24
LIG1-201ENST00000263274 ADGBQ8N7X0 1667 aa16.56■□□□□ 0.24
LIG1-201ENST00000263274 CANXP27824 592 aaKnown RBP16.55■□□□□ 0.24
LIG1-201ENST00000263274 PARD3Q8TEW0 1356 aa16.55■□□□□ 0.24
LIG1-201ENST00000263274 PRAG1Q86YV5 1406 aa16.55■□□□□ 0.24
LIG1-201ENST00000263274 CCDC141Q6ZP82 1450 aa16.54■□□□□ 0.24
LIG1-201ENST00000263274 PLEKHH2Q8IVE3 1493 aa16.54■□□□□ 0.24
LIG1-201ENST00000263274 ARHGAP5Q13017 1502 aa16.53■□□□□ 0.24
LIG1-201ENST00000263274 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
LIG1-201ENST00000263274 PPP2R1AP30153 589 aa16.53■□□□□ 0.24
LIG1-201ENST00000263274 FAM135AQ9P2D6 1515 aa16.53■□□□□ 0.24
LIG1-201ENST00000263274 NPM1P06748 294 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIG1-201ENST00000263274 GOLGA2Q08379 1002 aa16.53■□□□□ 0.24
LIG1-201ENST00000263274 APAF1O14727 1248 aa16.52■□□□□ 0.24
LIG1-201ENST00000263274 AFAP1Q8N556 730 aa16.52■□□□□ 0.24
LIG1-201ENST00000263274 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.52■□□□□ 0.24
LIG1-201ENST00000263274 ABCC10Q5T3U5 1492 aa16.52■□□□□ 0.23
LIG1-201ENST00000263274 POLR1AO95602 1720 aaPredicted RBP16.52■□□□□ 0.23
LIG1-201ENST00000263274 NUP160Q12769 1436 aa16.51■□□□□ 0.23
LIG1-201ENST00000263274 ARHGEF12Q9NZN5 1544 aa16.51■□□□□ 0.23
LIG1-201ENST00000263274 EFCAB2Q5VUJ9 269 aa16.51■□□□□ 0.23
LIG1-201ENST00000263274 ERCC6L2Q5T890 1561 aa16.5■□□□□ 0.23
LIG1-201ENST00000263274 MS4A1P11836 297 aa16.49■□□□□ 0.23
LIG1-201ENST00000263274 UBE2Q2Q8WVN8 375 aa16.49■□□□□ 0.23
LIG1-201ENST00000263274 CDC42BPAQ5VT25 1732 aa16.48■□□□□ 0.23
LIG1-201ENST00000263274 CDCA8Q53HL2 280 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 FRAT1Q92837 279 aaPredicted RBP16.47■□□□□ 0.23
LIG1-201ENST00000263274 A2MP01023 1474 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 SHANK2Q9UPX8 1470 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 KIF3BO15066 747 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 DDRGK1Q96HY6 314 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 SYCP2Q9BX26 1530 aa16.47■□□□□ 0.23
LIG1-201ENST00000263274 SPAG9O60271 1321 aaKnown RBP16.46■□□□□ 0.23
LIG1-201ENST00000263274 PPM1GO15355 546 aaPredicted RBP16.46■□□□□ 0.23
LIG1-201ENST00000263274 TRHP20396 242 aaPredicted RBP16.46■□□□□ 0.23
LIG1-201ENST00000263274 WASHC2CQ9Y4E1 1318 aa16.46■□□□□ 0.22
LIG1-201ENST00000263274 BCAR3O75815 825 aa16.46■□□□□ 0.22
LIG1-201ENST00000263274 RRP7AQ9Y3A4 280 aaKnown RBP16.45■□□□□ 0.22
LIG1-201ENST00000263274 CFAP70Q5T0N1 1121 aa16.44■□□□□ 0.22
LIG1-201ENST00000263274 DUSP27Q5VZP5 1158 aa16.44■□□□□ 0.22
LIG1-201ENST00000263274 PLA2R1Q13018 1463 aa16.44■□□□□ 0.22
LIG1-201ENST00000263274 CROCC2H7BZ55 1655 aa16.44■□□□□ 0.22
LIG1-201ENST00000263274 PLEKHH1Q9ULM0 1364 aa16.43■□□□□ 0.22
LIG1-201ENST00000263274 PODXL2Q9NZ53 605 aa16.42■□□□□ 0.22
LIG1-201ENST00000263274 CENPQQ7L2Z9 268 aaPredicted RBP16.42■□□□□ 0.22
LIG1-201ENST00000263274 ABCA8O94911 1581 aa16.41■□□□□ 0.22
LIG1-201ENST00000263274 COL17A1Q9UMD9 1497 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms