RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KIF3AQ9Y496 699 aa23.91■■□□□ 1.42
UPF1-201ENST00000262803 ST20-MTHFSA0A0A6YYL1 179 aa23.91■■□□□ 1.42
UPF1-201ENST00000262803 CLUAP1Q96AJ1 413 aa23.91■■□□□ 1.42
UPF1-201ENST00000262803 KIF15Q9NS87 1388 aa23.9■■□□□ 1.42
UPF1-201ENST00000262803 GZF1Q9H116 711 aaPredicted RBP23.9■■□□□ 1.42
UPF1-201ENST00000262803 CENPJQ9HC77 1338 aaPredicted RBP23.89■■□□□ 1.41
UPF1-201ENST00000262803 PRKRIP1Q9H875 184 aaPredicted RBP23.88■■□□□ 1.41
UPF1-201ENST00000262803 MYBBP1AQ9BQG0 1328 aaKnown RBP23.88■■□□□ 1.41
UPF1-201ENST00000262803 MFAP1P55081 439 aaKnown RBP23.88■■□□□ 1.41
UPF1-201ENST00000262803 CCDC9Q9Y3X0 531 aaKnown RBP23.87■■□□□ 1.41
UPF1-201ENST00000262803 AMPHP49418 695 aa23.86■■□□□ 1.41
UPF1-201ENST00000262803 G3V3G9 751 aa23.86■■□□□ 1.41
UPF1-201ENST00000262803 DCAF8Q5TAQ9 597 aa23.86■■□□□ 1.41
UPF1-201ENST00000262803 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
UPF1-201ENST00000262803 USP35Q9P2H5 1018 aa23.83■■□□□ 1.41
UPF1-201ENST00000262803 ZNF330Q9Y3S2 320 aaPredicted RBP23.83■■□□□ 1.41
UPF1-201ENST00000262803 PANK3Q9H999 370 aa23.82■■□□□ 1.4
UPF1-201ENST00000262803 JPH4Q96JJ6 628 aa23.8■■□□□ 1.4
UPF1-201ENST00000262803 VGFO15240 615 aaPredicted RBP23.8■■□□□ 1.4
UPF1-201ENST00000262803 LRRFIP1Q32MZ4 808 aaKnown RBP23.79■■□□□ 1.4
UPF1-201ENST00000262803 ZBED9Q6R2W3 1325 aa23.79■■□□□ 1.4
UPF1-201ENST00000262803 CCDC144AA2RUR9 1427 aa23.79■■□□□ 1.4
UPF1-201ENST00000262803 CHMP3Q9Y3E7 222 aa23.78■■□□□ 1.4
UPF1-201ENST00000262803 NUTM2DQ5VT03 806 aaPredicted RBP23.77■■□□□ 1.4
UPF1-201ENST00000262803 SMARCA4P51532 1647 aa23.76■■□□□ 1.39
UPF1-201ENST00000262803 NGEFQ8N5V2 710 aa23.76■■□□□ 1.39
UPF1-201ENST00000262803 TRAK1Q9UPV9 953 aa23.76■■□□□ 1.39
UPF1-201ENST00000262803 HSP90B1P14625 803 aaKnown RBP23.75■■□□□ 1.39
UPF1-201ENST00000262803 USP47Q96K76 1375 aa23.75■■□□□ 1.39
UPF1-201ENST00000262803 STAC3Q96MF2 364 aa23.74■■□□□ 1.39
UPF1-201ENST00000262803 RRP7AQ9Y3A4 280 aaKnown RBP23.74■■□□□ 1.39
UPF1-201ENST00000262803 GOLGA6L3A6NEY3 463 aa23.74■■□□□ 1.39
UPF1-201ENST00000262803 GTF2E1P29083 439 aaPredicted RBP23.73■■□□□ 1.39
UPF1-201ENST00000262803 EVC2Q86UK5 1308 aa23.73■■□□□ 1.39
UPF1-201ENST00000262803 PLIN1O60240 522 aa23.73■■□□□ 1.39
UPF1-201ENST00000262803 RRP1P56182 461 aaKnown RBP23.72■■□□□ 1.39
UPF1-201ENST00000262803 CENPQQ7L2Z9 268 aaPredicted RBP23.72■■□□□ 1.39
UPF1-201ENST00000262803 EXOC6Q8TAG9 804 aa23.72■■□□□ 1.39
UPF1-201ENST00000262803 PHF14O94880 888 aa23.72■■□□□ 1.39
UPF1-201ENST00000262803 PDE4AP27815 886 aa23.72■■□□□ 1.39
UPF1-201ENST00000262803 TRIM6-TRIM34B2RNG4 842 aa23.71■■□□□ 1.39
UPF1-201ENST00000262803 C1orf141Q5JVX7 400 aa23.7■■□□□ 1.39
UPF1-201ENST00000262803 SLC4A10Q6U841 1118 aa23.7■■□□□ 1.38
UPF1-201ENST00000262803 ST18O60284 1047 aa23.7■■□□□ 1.38
UPF1-201ENST00000262803 COG3Q96JB2 828 aa23.7■■□□□ 1.38
UPF1-201ENST00000262803 CGNL1Q0VF96 1302 aa23.69■■□□□ 1.38
UPF1-201ENST00000262803 NOC3LQ8WTT2 800 aaKnown RBP23.69■■□□□ 1.38
UPF1-201ENST00000262803 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.68■■□□□ 1.38
UPF1-201ENST00000262803 PTPRGP23470 1445 aa23.68■■□□□ 1.38
UPF1-201ENST00000262803 KIF16BQ96L93 1317 aa23.68■■□□□ 1.38
UPF1-201ENST00000262803 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.67■■□□□ 1.38
UPF1-201ENST00000262803 RASSF8Q8NHQ8 419 aa23.67■■□□□ 1.38
UPF1-201ENST00000262803 FAM161AQ3B820 660 aa23.67■■□□□ 1.38
UPF1-201ENST00000262803 BCL2L13Q9BXK5 485 aa23.66■■□□□ 1.38
UPF1-201ENST00000262803 FRAT2O75474 233 aaPredicted RBP23.66■■□□□ 1.38
UPF1-201ENST00000262803 FOXD4L1Q9NU39 408 aa23.66■■□□□ 1.38
UPF1-201ENST00000262803 E9PSI1 815 aa23.65■■□□□ 1.38
UPF1-201ENST00000262803 CRBNQ96SW2 442 aa23.65■■□□□ 1.38
UPF1-201ENST00000262803 AMOTL1Q8IY63 956 aa23.64■■□□□ 1.37
UPF1-201ENST00000262803 CEP89Q96ST8 783 aa23.63■■□□□ 1.37
UPF1-201ENST00000262803 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
UPF1-201ENST00000262803 ATP6V1DQ9Y5K8 247 aa23.62■■□□□ 1.37
UPF1-201ENST00000262803 NEXNQ0ZGT2 675 aa23.61■■□□□ 1.37
UPF1-201ENST00000262803 NOL10Q9BSC4 688 aaKnown RBP23.61■■□□□ 1.37
UPF1-201ENST00000262803 MARCH6O60337 910 aa23.6■■□□□ 1.37
UPF1-201ENST00000262803 SLC4A3P48751 1232 aa23.6■■□□□ 1.37
UPF1-201ENST00000262803 APAF1O14727 1248 aa23.6■■□□□ 1.37
UPF1-201ENST00000262803 NOL8Q76FK4 1167 aaKnown RBP23.6■■□□□ 1.37
UPF1-201ENST00000262803 ROCK1Q13464 1354 aa23.59■■□□□ 1.37
UPF1-201ENST00000262803 ZKSCAN2Q63HK3 967 aa23.59■■□□□ 1.37
UPF1-201ENST00000262803 IGF1RP08069 1367 aa23.59■■□□□ 1.37
UPF1-201ENST00000262803 COG6Q9Y2V7 657 aa23.59■■□□□ 1.37
UPF1-201ENST00000262803 ELL2O00472 640 aaPredicted RBP23.58■■□□□ 1.37
UPF1-201ENST00000262803 EVA1CP58658 441 aa23.58■■□□□ 1.37
UPF1-201ENST00000262803 TTC5Q8N0Z6 440 aa23.58■■□□□ 1.37
UPF1-201ENST00000262803 WWC1Q8IX03 1113 aa23.58■■□□□ 1.37
UPF1-201ENST00000262803 TPM3P06753 285 aa23.58■■□□□ 1.36
UPF1-201ENST00000262803 TEFQ10587 303 aa23.57■■□□□ 1.36
UPF1-201ENST00000262803 CPLX2Q6PUV4 134 aaKnown RBP23.57■■□□□ 1.36
UPF1-201ENST00000262803 NUTM2FA1L443 756 aa23.56■■□□□ 1.36
UPF1-201ENST00000262803 AKAP17AQ02040 695 aaKnown RBP23.56■■□□□ 1.36
UPF1-201ENST00000262803 SYNE3Q6ZMZ3 975 aa23.56■■□□□ 1.36
UPF1-201ENST00000262803 RUFY2Q8WXA3 655 aa23.56■■□□□ 1.36
UPF1-201ENST00000262803 ANO8Q9HCE9 1232 aaPredicted RBP23.56■■□□□ 1.36
UPF1-201ENST00000262803 TOMM22Q9NS69 142 aa23.56■■□□□ 1.36
UPF1-201ENST00000262803 FANCIQ9NVI1 1328 aa23.55■■□□□ 1.36
UPF1-201ENST00000262803 GOLGA6L1Q8N7Z2 621 aa23.55■■□□□ 1.36
UPF1-201ENST00000262803 FGD6Q6ZV73 1430 aa23.55■■□□□ 1.36
UPF1-201ENST00000262803 OSCARQ8IYS5 282 aa23.55■■□□□ 1.36
UPF1-201ENST00000262803 SF3A1Q15459 793 aaKnown RBP23.54■■□□□ 1.36
UPF1-201ENST00000262803 TPM2P07951 284 aa23.54■■□□□ 1.36
UPF1-201ENST00000262803 ANKRD45Q5TZF3 282 aa23.54■■□□□ 1.36
UPF1-201ENST00000262803 DDX58O95786 925 aaKnown RBP23.54■■□□□ 1.36
UPF1-201ENST00000262803 LTV1Q96GA3 475 aaPredicted RBP23.54■■□□□ 1.36
UPF1-201ENST00000262803 CCDC7Q96M83 1385 aa23.53■■□□□ 1.36
UPF1-201ENST00000262803 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.53■■□□□ 1.36
UPF1-201ENST00000262803 MYOM3Q5VTT5 1437 aa23.53■■□□□ 1.36
UPF1-201ENST00000262803 KIF7Q2M1P5 1343 aa23.52■■□□□ 1.36
UPF1-201ENST00000262803 DDX11L8A8MPP1 907 aa23.52■■□□□ 1.36
UPF1-201ENST00000262803 WASHC2AQ641Q2 1341 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms