RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 RWDD1Q9H446 243 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-202ENST00000261517 RPGRIP1LQ68CZ1 1315 aa5.46□□□□□ -1.54
VPS13C-202ENST00000261517 TRIM44Q96DX7 344 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-202ENST00000261517 TCERG1O14776 1098 aaKnown RBP5.46□□□□□ -1.54
VPS13C-202ENST00000261517 SRPK2P78362 688 aaKnown RBP5.46□□□□□ -1.54
VPS13C-202ENST00000261517 NCOA2Q15596 1464 aa5.46□□□□□ -1.54
VPS13C-202ENST00000261517 POLA1P09884 1462 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-202ENST00000261517 SYAP1Q96A49 352 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-202ENST00000261517 TMX4Q9H1E5 349 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-202ENST00000261517 MYBBP1AQ9BQG0 1328 aaKnown RBP5.45□□□□□ -1.54
VPS13C-202ENST00000261517 HSP90B1P14625 803 aaKnown RBP5.45□□□□□ -1.54
VPS13C-202ENST00000261517 NESP48681 1621 aa5.45□□□□□ -1.54
VPS13C-202ENST00000261517 ANKRD30BQ9BXX2 1392 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 HSCBQ8IWL3 235 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 DHX57Q6P158 1386 aaKnown RBP5.44□□□□□ -1.54
VPS13C-202ENST00000261517 GOLGA2Q08379 1002 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 MIER1Q8N108 512 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 KIAA1211Q6ZU35 1233 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 STK31Q9BXU1 1019 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 ANKRD50Q9ULJ7 1429 aa5.44□□□□□ -1.54
VPS13C-202ENST00000261517 CT47B1P0C2W7 299 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-202ENST00000261517 TNNT2P45379 298 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-202ENST00000261517 PHF14O94880 888 aa5.42□□□□□ -1.54
VPS13C-202ENST00000261517 HSPA5P11021 654 aaKnown RBP5.42□□□□□ -1.54
VPS13C-202ENST00000261517 OS9Q13438 667 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-202ENST00000261517 GBP4Q96PP9 640 aa5.42□□□□□ -1.54
VPS13C-202ENST00000261517 KIF3BO15066 747 aa5.42□□□□□ -1.54
VPS13C-202ENST00000261517 CFAP74Q9C0B2 1584 aa5.42□□□□□ -1.54
VPS13C-202ENST00000261517 SLC52A1Q9NWF4 448 aa5.42□□□□□ -1.54
VPS13C-202ENST00000261517 CHAF1AQ13111 956 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-202ENST00000261517 ZBED9Q6R2W3 1325 aa5.41□□□□□ -1.54
VPS13C-202ENST00000261517 C9orf84Q5VXU9 1444 aa5.41□□□□□ -1.54
VPS13C-202ENST00000261517 USP47Q96K76 1375 aa5.41□□□□□ -1.54
VPS13C-202ENST00000261517 E9PSI1 815 aa5.41□□□□□ -1.54
VPS13C-202ENST00000261517 EIF2AK4Q9P2K8 1649 aaKnown RBP5.41□□□□□ -1.54
VPS13C-202ENST00000261517 BRD4O60885 1362 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-202ENST00000261517 PTPN23Q9H3S7 1636 aa5.41□□□□□ -1.54
VPS13C-202ENST00000261517 PDIA4P13667 645 aaKnown RBP5.4□□□□□ -1.54
VPS13C-202ENST00000261517 CFAP43Q8NDM7 1665 aa5.4□□□□□ -1.54
VPS13C-202ENST00000261517 EPRSP07814 1512 aaKnown RBP5.4□□□□□ -1.54
VPS13C-202ENST00000261517 TPM4P67936 248 aa5.4□□□□□ -1.54
VPS13C-202ENST00000261517 ZNF428Q96B54 188 aa5.4□□□□□ -1.54
VPS13C-202ENST00000261517 KIAA1107Q9UPP5 1409 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 FGD1P98174 961 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 RCAN3Q9UKA8 241 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 PRG4Q92954 1404 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-202ENST00000261517 HSP90AB1P08238 724 aaKnown RBP5.4□□□□□ -1.55
VPS13C-202ENST00000261517 KCNJ4P48050 445 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 U2SURPO15042 1029 aaKnown RBP5.4□□□□□ -1.55
VPS13C-202ENST00000261517 ATP6V1DQ9Y5K8 247 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 NPHP1O15259 732 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 RAD54L2Q9Y4B4 1467 aa5.4□□□□□ -1.55
VPS13C-202ENST00000261517 GGT6Q6P531 493 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 HSP90AB4PQ58FF6 505 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 GOLGA6L4A6NEF3 574 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 GRIN2AQ12879 1464 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 TEX14Q8IWB6 1497 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 KANK4Q5T7N3 995 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-202ENST00000261517 SMC4Q9NTJ3 1288 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 KIF16BQ96L93 1317 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 COG3Q96JB2 828 aa5.39□□□□□ -1.55
VPS13C-202ENST00000261517 ARAP1Q96P48 1450 aa5.38□□□□□ -1.55
VPS13C-202ENST00000261517 PLB1Q6P1J6 1458 aa5.38□□□□□ -1.55
VPS13C-202ENST00000261517 RAPGEF6Q8TEU7 1601 aa5.38□□□□□ -1.55
VPS13C-202ENST00000261517 DHX8Q14562 1220 aaKnown RBP5.38□□□□□ -1.55
VPS13C-202ENST00000261517 CENPJQ9HC77 1338 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-202ENST00000261517 CENPQQ7L2Z9 268 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-202ENST00000261517 SMG6Q86US8 1419 aaKnown RBP5.38□□□□□ -1.55
VPS13C-202ENST00000261517 FOXD1Q16676 465 aa5.38□□□□□ -1.55
VPS13C-202ENST00000261517 PTMAP06454 111 aaKnown RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 TRHP20396 242 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 RUFY2Q8WXA3 655 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 FAM135AQ9P2D6 1515 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 ATAD2Q6PL18 1390 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 KIAA2012Q0VF49 1180 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 SKOR2Q2VWA4 1001 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 NOP58Q9Y2X3 529 aaKnown RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 U2AF1L5P0DN76 240 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 U2AF1Q01081 240 aaKnown RBP eCLIP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 PBRM1Q86U86 1689 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 ST18O60284 1047 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 L3MBTL2Q969R5 705 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 API5Q9BZZ5 524 aaKnown RBP5.37□□□□□ -1.55
VPS13C-202ENST00000261517 SIN3AQ96ST3 1273 aa5.37□□□□□ -1.55
VPS13C-202ENST00000261517 DDX58O95786 925 aaKnown RBP5.36□□□□□ -1.55
VPS13C-202ENST00000261517 CC2D1BQ5T0F9 858 aaKnown RBP5.36□□□□□ -1.55
VPS13C-202ENST00000261517 HNRNPMP52272 730 aaKnown RBP eCLIP5.36□□□□□ -1.556e-6■■■■□ 20.3
VPS13C-202ENST00000261517 NSD2O96028 1365 aa5.36□□□□□ -1.55
VPS13C-202ENST00000261517 SHANK2Q9UPX8 1470 aa5.36□□□□□ -1.55
VPS13C-202ENST00000261517 UGGT2Q9NYU1 1516 aa5.36□□□□□ -1.55
VPS13C-202ENST00000261517 PCF11O94913 1555 aaKnown RBP5.36□□□□□ -1.55
VPS13C-202ENST00000261517 NGDNQ8NEJ9 315 aaKnown RBP5.36□□□□□ -1.55
VPS13C-202ENST00000261517 ZNF692Q9BU19 519 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-202ENST00000261517 DDX19BQ9UMR2 479 aa5.36□□□□□ -1.55
VPS13C-202ENST00000261517 SUPT16HQ9Y5B9 1047 aaKnown RBP5.35□□□□□ -1.55
VPS13C-202ENST00000261517 DDX11L8A8MPP1 907 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 AMPHP49418 695 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 C1orf141Q5JVX7 400 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 ADGBQ8N7X0 1667 aa5.35□□□□□ -1.55
VPS13C-202ENST00000261517 NUP160Q12769 1436 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms