RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 BRPF1P55201 1214 aaPredicted RBP9.86□□□□□ -0.83
CCDC54-201ENST00000261058 AK7Q96M32 723 aa9.86□□□□□ -0.83
CCDC54-201ENST00000261058 MAP2K5Q13163 448 aa9.85□□□□□ -0.83
CCDC54-201ENST00000261058 CDHR5Q9HBB8 845 aa9.85□□□□□ -0.83
CCDC54-201ENST00000261058 MINK1Q8N4C8 1332 aaPredicted RBP9.85□□□□□ -0.83
CCDC54-201ENST00000261058 MAP3K7O43318 606 aa9.84□□□□□ -0.83
CCDC54-201ENST00000261058 ZDHHC16Q969W1 377 aa9.84□□□□□ -0.83
CCDC54-201ENST00000261058 TSR1Q2NL82 804 aaKnown RBP9.83□□□□□ -0.84
CCDC54-201ENST00000261058 ZNF454Q8N9F8 522 aa9.83□□□□□ -0.84
CCDC54-201ENST00000261058 LHX6Q9UPM6 363 aa9.83□□□□□ -0.84
CCDC54-201ENST00000261058 FECHP22830 423 aa9.82□□□□□ -0.84
CCDC54-201ENST00000261058 PSDA5PKW4 1024 aaPredicted RBP9.82□□□□□ -0.84
CCDC54-201ENST00000261058 IRF6O14896 467 aa9.82□□□□□ -0.84
CCDC54-201ENST00000261058 SPNS2Q8IVW8 549 aa9.82□□□□□ -0.84
CCDC54-201ENST00000261058 KRI1Q8N9T8 703 aaKnown RBP9.82□□□□□ -0.84
CCDC54-201ENST00000261058 RBM33Q96EV2 1170 aaKnown RBP9.82□□□□□ -0.84
CCDC54-201ENST00000261058 TRIM66O15016 1216 aa9.81□□□□□ -0.84
CCDC54-201ENST00000261058 C6orf132Q5T0Z8 1188 aa9.81□□□□□ -0.84
CCDC54-201ENST00000261058 HS3ST6Q96QI5 342 aa9.81□□□□□ -0.84
CCDC54-201ENST00000261058 ADAM33Q9BZ11 813 aa9.81□□□□□ -0.84
CCDC54-201ENST00000261058 FAM205CA6NFA0 338 aa9.79□□□□□ -0.84
CCDC54-201ENST00000261058 MMRN1Q13201 1228 aa9.79□□□□□ -0.84
CCDC54-201ENST00000261058 CERKQ8TCT0 537 aa9.79□□□□□ -0.84
CCDC54-201ENST00000261058 CCDC102AQ96A19 550 aa9.79□□□□□ -0.84
CCDC54-201ENST00000261058 BCL2L12Q9HB09 334 aa9.78□□□□□ -0.84
CCDC54-201ENST00000261058 PPP4R3BQ5MIZ7 849 aa9.77□□□□□ -0.85
CCDC54-201ENST00000261058 TTC13Q8NBP0 860 aa9.77□□□□□ -0.85
CCDC54-201ENST00000261058 RBM27Q9P2N5 1060 aaKnown RBP9.77□□□□□ -0.85
CCDC54-201ENST00000261058 AMHR2Q16671 573 aa9.76□□□□□ -0.85
CCDC54-201ENST00000261058 PDE4DQ08499 809 aa9.74□□□□□ -0.85
CCDC54-201ENST00000261058 NEUROD2Q15784 382 aa9.74□□□□□ -0.85
CCDC54-201ENST00000261058 POTEB3A0JP26 581 aa9.73□□□□□ -0.85
CCDC54-201ENST00000261058 TMEM132AQ24JP5 1023 aa9.73□□□□□ -0.85
CCDC54-201ENST00000261058 POTEBQ6S5H4 581 aa9.73□□□□□ -0.85
CCDC54-201ENST00000261058 KRTAP3-3Q9BYR6 98 aa9.73□□□□□ -0.85
CCDC54-201ENST00000261058 KRTAP3-2Q9BYR7 98 aa9.73□□□□□ -0.85
CCDC54-201ENST00000261058 PPP1R3GB7ZBB8 358 aa9.7□□□□□ -0.86
CCDC54-201ENST00000261058 COL9A1P20849 921 aa9.7□□□□□ -0.86
CCDC54-201ENST00000261058 PRSS12P56730 875 aa9.7□□□□□ -0.86
CCDC54-201ENST00000261058 PADI6Q6TGC4 694 aa9.7□□□□□ -0.86
CCDC54-201ENST00000261058 GPBP1L1Q9HC44 474 aaPredicted RBP9.7□□□□□ -0.86
CCDC54-201ENST00000261058 ERBB3P21860 1342 aa9.69□□□□□ -0.86
CCDC54-201ENST00000261058 PTPREP23469 700 aa9.69□□□□□ -0.86
CCDC54-201ENST00000261058 KDM4CQ9H3R0 1056 aa9.69□□□□□ -0.86
CCDC54-201ENST00000261058 PARP9Q8IXQ6 854 aa9.68□□□□□ -0.86
CCDC54-201ENST00000261058 CDCA7LQ96GN5 454 aa9.68□□□□□ -0.86
CCDC54-201ENST00000261058 ADGRG1Q9Y653 693 aa9.68□□□□□ -0.86
CCDC54-201ENST00000261058 PHOX2BQ99453 314 aa9.67□□□□□ -0.86
CCDC54-201ENST00000261058 TMUB1Q9BVT8 246 aa9.67□□□□□ -0.86
CCDC54-201ENST00000261058 METTL3Q86U44 580 aaKnown RBP9.66□□□□□ -0.86
CCDC54-201ENST00000261058 FAM198AQ9UFP1 575 aa9.66□□□□□ -0.86
CCDC54-201ENST00000261058 PXYLP1Q8TE99 480 aa9.65□□□□□ -0.86
CCDC54-201ENST00000261058 OATP04181 439 aa9.65□□□□□ -0.87
CCDC54-201ENST00000261058 POTEEQ6S8J3 1075 aa9.64□□□□□ -0.87
CCDC54-201ENST00000261058 TSKSQ9UJT2 592 aa9.64□□□□□ -0.87
CCDC54-201ENST00000261058 ONECUT3O60422 494 aaPredicted RBP9.63□□□□□ -0.87
CCDC54-201ENST00000261058 FAM161AQ3B820 660 aa9.63□□□□□ -0.87
CCDC54-201ENST00000261058 VARS2Q5ST30 1063 aaKnown RBP9.63□□□□□ -0.87
CCDC54-201ENST00000261058 REPIN1Q9BWE0 567 aaKnown RBP9.63□□□□□ -0.87
CCDC54-201ENST00000261058 TRIM6-TRIM34B2RNG4 842 aa9.62□□□□□ -0.87
CCDC54-201ENST00000261058 KCNK17Q96T54 332 aa9.61□□□□□ -0.87
CCDC54-201ENST00000261058 EYA1Q99502 592 aa9.61□□□□□ -0.87
CCDC54-201ENST00000261058 DAXXQ9UER7 740 aaPredicted RBP9.61□□□□□ -0.87
CCDC54-201ENST00000261058 C3orf80F5H4A9 247 aa9.6□□□□□ -0.87
CCDC54-201ENST00000261058 ARHGAP33O14559 1287 aa9.6□□□□□ -0.87
CCDC54-201ENST00000261058 GIGYF2Q6Y7W6 1299 aaKnown RBP9.6□□□□□ -0.87
CCDC54-201ENST00000261058 ZBED2Q9BTP6 218 aa9.6□□□□□ -0.87
CCDC54-201ENST00000261058 SLC4A5Q9BY07 1137 aa9.6□□□□□ -0.87
CCDC54-201ENST00000261058 CLCN1P35523 988 aa9.59□□□□□ -0.87
CCDC54-201ENST00000261058 PBX2P40425 430 aa9.59□□□□□ -0.87
CCDC54-201ENST00000261058 ZNF687Q8N1G0 1237 aa9.59□□□□□ -0.87
CCDC54-201ENST00000261058 GPCPD1Q9NPB8 672 aa9.59□□□□□ -0.87
CCDC54-201ENST00000261058 TTLL12Q14166 644 aaPredicted RBP9.58□□□□□ -0.88
CCDC54-201ENST00000261058 RBM46Q8TBY0 533 aaKnown RBP9.58□□□□□ -0.88
CCDC54-201ENST00000261058 FAM117AQ9C073 453 aa9.58□□□□□ -0.88
CCDC54-201ENST00000261058 PLEKHG3A1L390 1219 aa9.57□□□□□ -0.88
CCDC54-201ENST00000261058 PSEN2P49810 448 aa9.57□□□□□ -0.88
CCDC54-201ENST00000261058 PROX2Q3B8N5 592 aa9.57□□□□□ -0.88
CCDC54-201ENST00000261058 MS4A1P11836 297 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 MDM2Q00987 491 aaPredicted RBP9.56□□□□□ -0.88
CCDC54-201ENST00000261058 DDRGK1Q96HY6 314 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 KCNH8Q96L42 1107 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.56□□□□□ -0.88
CCDC54-201ENST00000261058 NBPF26B4DH59 902 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 PACS2Q86VP3 889 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 TATDN2Q93075 761 aa9.56□□□□□ -0.88
CCDC54-201ENST00000261058 NUDT18Q6ZVK8 323 aa9.55□□□□□ -0.88
CCDC54-201ENST00000261058 IL27Q8NEV9 243 aa9.55□□□□□ -0.88
CCDC54-201ENST00000261058 FAM217BQ9NTX9 383 aaPredicted RBP9.55□□□□□ -0.88
CCDC54-201ENST00000261058 RCCD1A6NED2 376 aa9.54□□□□□ -0.88
CCDC54-201ENST00000261058 DMRTA1Q5VZB9 504 aa9.54□□□□□ -0.88
CCDC54-201ENST00000261058 NLRP7Q8WX94 980 aa9.54□□□□□ -0.88
CCDC54-201ENST00000261058 RABGEF1Q9UJ41 708 aa9.53□□□□□ -0.88
CCDC54-201ENST00000261058 AXIN2Q9Y2T1 843 aa9.53□□□□□ -0.88
CCDC54-201ENST00000261058 KIAA1468Q9P260 1216 aa9.52□□□□□ -0.89
CCDC54-201ENST00000261058 PNMA3Q9UL41 463 aa9.52□□□□□ -0.89
CCDC54-201ENST00000261058 DNAJB2P25686 324 aa9.51□□□□□ -0.89
CCDC54-201ENST00000261058 SSTR3P32745 418 aaPredicted RBP9.51□□□□□ -0.89
CCDC54-201ENST00000261058 RNF166Q96A37 237 aaPredicted RBP9.51□□□□□ -0.89
CCDC54-201ENST00000261058 TMEM134Q9H6X4 195 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms