RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 REV3LO60673 3130 aa9.37□□□□□ -0.91
TOPBP1-201ENST00000260810 NRXN1Q9ULB1 1477 aa9.36□□□□□ -0.91
TOPBP1-201ENST00000260810 ATP7AQ04656 1500 aa9.35□□□□□ -0.91
TOPBP1-201ENST00000260810 FER1L4A9Z1Z3 1794 aa9.35□□□□□ -0.91
TOPBP1-201ENST00000260810 EFCAB6Q5THR3 1501 aa9.35□□□□□ -0.91
TOPBP1-201ENST00000260810 UBR1Q8IWV7 1749 aa9.35□□□□□ -0.91
TOPBP1-201ENST00000260810 LMTK2Q8IWU2 1503 aa9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 ARID3CA6NKF2 412 aa9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 RGPD8O14715 1765 aaPredicted RBP9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 ANKRD30BQ9BXX2 1392 aa9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 C11orf95C9JLR9 678 aaPredicted RBP9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 TET3O43151 1660 aa9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 CRYBG1Q9Y4K1 1723 aa9.34□□□□□ -0.91
TOPBP1-201ENST00000260810 UBTFP17480 764 aaKnown RBP9.33□□□□□ -0.92
TOPBP1-201ENST00000260810 PTPRTO14522 1441 aa9.33□□□□□ -0.92
TOPBP1-201ENST00000260810 POGZQ7Z3K3 1410 aa9.33□□□□□ -0.92
TOPBP1-201ENST00000260810 KIAA1107Q9UPP5 1409 aa9.33□□□□□ -0.92
TOPBP1-201ENST00000260810 MUC3AQ02505 3323 aa9.33□□□□□ -0.92
TOPBP1-201ENST00000260810 CLTCQ00610 1675 aaKnown RBP9.32□□□□□ -0.92
TOPBP1-201ENST00000260810 USP32Q8NFA0 1604 aa9.32□□□□□ -0.92
TOPBP1-201ENST00000260810 VCANP13611 3396 aa9.32□□□□□ -0.92
TOPBP1-201ENST00000260810 MLH3Q9UHC1 1453 aa9.32□□□□□ -0.92
TOPBP1-201ENST00000260810 ARHGEF40Q8TER5 1519 aa9.31□□□□□ -0.92
TOPBP1-201ENST00000260810 CHMP7Q8WUX9 453 aaPredicted RBP9.31□□□□□ -0.92
TOPBP1-201ENST00000260810 ARHGEF28Q8N1W1 1705 aaKnown RBP9.31□□□□□ -0.92
TOPBP1-201ENST00000260810 MYO15AQ9UKN7 3530 aa9.31□□□□□ -0.92
TOPBP1-201ENST00000260810 NEURL4Q96JN8 1562 aa9.3□□□□□ -0.92
TOPBP1-201ENST00000260810 ABCC3O15438 1527 aa9.3□□□□□ -0.92
TOPBP1-201ENST00000260810 ROCK1Q13464 1354 aa9.3□□□□□ -0.92
TOPBP1-201ENST00000260810 NEXMIFQ5QGS0 1516 aa9.3□□□□□ -0.92
TOPBP1-201ENST00000260810 CEP170BQ9Y4F5 1589 aaPredicted RBP9.29□□□□□ -0.92
TOPBP1-201ENST00000260810 DUOX2Q9NRD8 1548 aa9.29□□□□□ -0.92
TOPBP1-201ENST00000260810 WDFY3Q8IZQ1 3526 aa9.29□□□□□ -0.92
TOPBP1-201ENST00000260810 FANCAO15360 1455 aa9.29□□□□□ -0.92
TOPBP1-201ENST00000260810 MYO3AQ8NEV4 1616 aa9.29□□□□□ -0.92
TOPBP1-201ENST00000260810 TTBK1Q5TCY1 1321 aaPredicted RBP9.28□□□□□ -0.92
TOPBP1-201ENST00000260810 DNAH14Q0VDD8 3507 aa9.28□□□□□ -0.92
TOPBP1-201ENST00000260810 ADGRB3O60242 1522 aa9.28□□□□□ -0.92
TOPBP1-201ENST00000260810 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.27□□□□□ -0.93
TOPBP1-201ENST00000260810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.27□□□□□ -0.93
TOPBP1-201ENST00000260810 RPRD2Q5VT52 1461 aaKnown RBP9.26□□□□□ -0.93
TOPBP1-201ENST00000260810 TRIM26Q12899 539 aaPredicted RBP9.26□□□□□ -0.93
TOPBP1-201ENST00000260810 NBPF8Q3BBV2 869 aa9.26□□□□□ -0.93
TOPBP1-201ENST00000260810 FOXD1Q16676 465 aa9.26□□□□□ -0.93
TOPBP1-201ENST00000260810 AFAP1Q8N556 730 aa9.26□□□□□ -0.93
TOPBP1-201ENST00000260810 NPATQ14207 1427 aa9.25□□□□□ -0.93
TOPBP1-201ENST00000260810 C9orf84Q5VXU9 1444 aa9.25□□□□□ -0.93
TOPBP1-201ENST00000260810 SPATA31D1Q6ZQQ2 1576 aa9.25□□□□□ -0.93
TOPBP1-201ENST00000260810 TRPM2O94759 1503 aa9.25□□□□□ -0.93
TOPBP1-201ENST00000260810 DNAJC5Q9H3Z4 198 aa9.24□□□□□ -0.93
TOPBP1-201ENST00000260810 HRCP23327 699 aa9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 CCDC141Q6ZP82 1450 aa9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 NOS1P29475 1434 aa9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 ZNF142P52746 1687 aaPredicted RBP9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 SHPRHQ149N8 1683 aa9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 SPTBN5Q9NRC6 3674 aaKnown RBP9.23□□□□□ -0.93
TOPBP1-201ENST00000260810 MED14O60244 1454 aa9.22□□□□□ -0.93
TOPBP1-201ENST00000260810 LAMC1P11047 1609 aa9.22□□□□□ -0.93
TOPBP1-201ENST00000260810 UNC80Q8N2C7 3258 aa9.22□□□□□ -0.93
TOPBP1-201ENST00000260810 SZT2Q5T011 3432 aa9.21□□□□□ -0.93
TOPBP1-201ENST00000260810 AGLP35573 1532 aa9.21□□□□□ -0.94
TOPBP1-201ENST00000260810 OSCARQ8IYS5 282 aa9.21□□□□□ -0.94
TOPBP1-201ENST00000260810 SIN3AQ96ST3 1273 aa9.2□□□□□ -0.94
TOPBP1-201ENST00000260810 KIAA1210Q9ULL0 1709 aa9.2□□□□□ -0.94
TOPBP1-201ENST00000260810 HNRNPMP52272 730 aaKnown RBP eCLIP9.2□□□□□ -0.94
TOPBP1-201ENST00000260810 NRKQ7Z2Y5 1582 aa9.19□□□□□ -0.94
TOPBP1-201ENST00000260810 ARHGAP5Q13017 1502 aa9.19□□□□□ -0.94
TOPBP1-201ENST00000260810 FBLN2P98095 1184 aa9.19□□□□□ -0.94
TOPBP1-201ENST00000260810 CD163L1Q9NR16 1453 aa9.18□□□□□ -0.94
TOPBP1-201ENST00000260810 TOPAZ1Q8N9V7 1692 aa9.18□□□□□ -0.94
TOPBP1-201ENST00000260810 RTEL1-TNFRSF6BF6WH68 1400 aa9.18□□□□□ -0.94
TOPBP1-201ENST00000260810 SETD5Q9C0A6 1442 aa9.18□□□□□ -0.94
TOPBP1-201ENST00000260810 RAPGEF3O95398 923 aa9.17□□□□□ -0.94
TOPBP1-201ENST00000260810 NEO1Q92859 1461 aa9.17□□□□□ -0.94
TOPBP1-201ENST00000260810 CARMIL2Q6F5E8 1435 aa9.16□□□□□ -0.94
TOPBP1-201ENST00000260810 ZFYVE9O95405 1425 aa9.16□□□□□ -0.94
TOPBP1-201ENST00000260810 NLRP1Q9C000 1473 aa9.16□□□□□ -0.94
TOPBP1-201ENST00000260810 XRN1Q8IZH2 1706 aaKnown RBP9.15□□□□□ -0.94
TOPBP1-201ENST00000260810 ADGRL1O94910 1474 aa9.15□□□□□ -0.94
TOPBP1-201ENST00000260810 CHD2O14647 1828 aaKnown RBP9.15□□□□□ -0.94
TOPBP1-201ENST00000260810 UHRF1BP1Q6BDS2 1440 aa9.15□□□□□ -0.94
TOPBP1-201ENST00000260810 DMDP11532 3685 aa9.15□□□□□ -0.94
TOPBP1-201ENST00000260810 ANKRD26Q9UPS8 1709 aa9.14□□□□□ -0.95
TOPBP1-201ENST00000260810 NALCNQ8IZF0 1738 aa9.13□□□□□ -0.95
TOPBP1-201ENST00000260810 KIF1BO60333 1816 aa9.13□□□□□ -0.95
TOPBP1-201ENST00000260810 CD109Q6YHK3 1445 aa9.13□□□□□ -0.95
TOPBP1-201ENST00000260810 VIRMAQ69YN4 1812 aaKnown RBP9.12□□□□□ -0.95
TOPBP1-201ENST00000260810 KCNH8Q96L42 1107 aa9.12□□□□□ -0.95
TOPBP1-201ENST00000260810 CFAP74Q9C0B2 1584 aa9.12□□□□□ -0.95
TOPBP1-201ENST00000260810 CYB5RLQ6IPT4 315 aa9.11□□□□□ -0.95
TOPBP1-201ENST00000260810 ERBINQ96RT1 1412 aa9.11□□□□□ -0.95
TOPBP1-201ENST00000260810 SCAPERQ9BY12 1400 aa9.11□□□□□ -0.95
TOPBP1-201ENST00000260810 KNDC1Q76NI1 1749 aa9.11□□□□□ -0.95
TOPBP1-201ENST00000260810 ANKRD50Q9ULJ7 1429 aa9.11□□□□□ -0.95
TOPBP1-201ENST00000260810 TULP4Q9NRJ4 1543 aa9.09□□□□□ -0.95
TOPBP1-201ENST00000260810 SPEGQ15772 3267 aa9.09□□□□□ -0.95
TOPBP1-201ENST00000260810 USP54Q70EL1 1684 aa9.08□□□□□ -0.96
TOPBP1-201ENST00000260810 MTUS2Q5JR59 1369 aa9.08□□□□□ -0.96
TOPBP1-201ENST00000260810 DHX29Q7Z478 1369 aaKnown RBP9.08□□□□□ -0.96
TOPBP1-201ENST00000260810 PTPRUQ92729 1446 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms