RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 SLC4A10Q6U841 1118 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 FGD5Q6ZNL6 1462 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 L3MBTL2Q969R5 705 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 HTATSF1O43719 755 aaKnown RBP10.92□□□□□ -0.66
PTCD3-201ENST00000254630 GBP4Q96PP9 640 aa10.92□□□□□ -0.66
PTCD3-201ENST00000254630 GAPVD1Q14C86 1478 aa10.92□□□□□ -0.66
PTCD3-201ENST00000254630 HDAC5Q9UQL6 1122 aa10.92□□□□□ -0.66
PTCD3-201ENST00000254630 CENPJQ9HC77 1338 aaPredicted RBP10.92□□□□□ -0.66
PTCD3-201ENST00000254630 KIAA2012Q0VF49 1180 aa10.92□□□□□ -0.66
PTCD3-201ENST00000254630 NUTM2FA1L443 756 aa10.91□□□□□ -0.66
PTCD3-201ENST00000254630 MFAP1P55081 439 aaKnown RBP10.91□□□□□ -0.66
PTCD3-201ENST00000254630 RTN4Q9NQC3 1192 aaKnown RBP10.9□□□□□ -0.66
PTCD3-201ENST00000254630 MYBBP1AQ9BQG0 1328 aaKnown RBP10.9□□□□□ -0.66
PTCD3-201ENST00000254630 C1orf141Q5JVX7 400 aa10.9□□□□□ -0.67
PTCD3-201ENST00000254630 EVC2Q86UK5 1308 aa10.89□□□□□ -0.67
PTCD3-201ENST00000254630 TPM4P67936 248 aa10.89□□□□□ -0.67
PTCD3-201ENST00000254630 COG3Q96JB2 828 aa10.89□□□□□ -0.67
PTCD3-201ENST00000254630 TCERG1O14776 1098 aaKnown RBP10.89□□□□□ -0.67
PTCD3-201ENST00000254630 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
PTCD3-201ENST00000254630 EVA1CP58658 441 aa10.88□□□□□ -0.67
PTCD3-201ENST00000254630 NCBP3Q53F19 620 aaKnown RBP10.88□□□□□ -0.67
PTCD3-201ENST00000254630 CGNL1Q0VF96 1302 aa10.87□□□□□ -0.67
PTCD3-201ENST00000254630 NLRP13Q86W25 1043 aa10.87□□□□□ -0.67
PTCD3-201ENST00000254630 SYAP1Q96A49 352 aaPredicted RBP10.87□□□□□ -0.67
PTCD3-201ENST00000254630 PANK3Q9H999 370 aa10.87□□□□□ -0.67
PTCD3-201ENST00000254630 RAD54L2Q9Y4B4 1467 aa10.87□□□□□ -0.67
PTCD3-201ENST00000254630 CSPP1Q1MSJ5 1256 aa10.87□□□□□ -0.67
PTCD3-201ENST00000254630 VGFO15240 615 aaPredicted RBP10.86□□□□□ -0.67
PTCD3-201ENST00000254630 ARHGAP5Q13017 1502 aa10.86□□□□□ -0.67
PTCD3-201ENST00000254630 RRP7AQ9Y3A4 280 aaKnown RBP10.86□□□□□ -0.67
PTCD3-201ENST00000254630 PDE3BQ13370 1112 aa10.85□□□□□ -0.67
PTCD3-201ENST00000254630 MEX3CQ5U5Q3 659 aaKnown RBP10.85□□□□□ -0.67
PTCD3-201ENST00000254630 FRAT2O75474 233 aaPredicted RBP10.84□□□□□ -0.67
PTCD3-201ENST00000254630 NOL8Q76FK4 1167 aaKnown RBP10.84□□□□□ -0.67
PTCD3-201ENST00000254630 CLUAP1Q96AJ1 413 aa10.84□□□□□ -0.67
PTCD3-201ENST00000254630 OSCARQ8IYS5 282 aa10.84□□□□□ -0.67
PTCD3-201ENST00000254630 USP47Q96K76 1375 aa10.84□□□□□ -0.67
PTCD3-201ENST00000254630 GTF2E1P29083 439 aaPredicted RBP10.84□□□□□ -0.67
PTCD3-201ENST00000254630 RBM19Q9Y4C8 960 aaKnown RBP10.84□□□□□ -0.67
PTCD3-201ENST00000254630 MINK1Q8N4C8 1332 aaPredicted RBP10.83□□□□□ -0.68
PTCD3-201ENST00000254630 CYB5RLQ6IPT4 315 aa10.83□□□□□ -0.68
PTCD3-201ENST00000254630 DHX57Q6P158 1386 aaKnown RBP10.83□□□□□ -0.68
PTCD3-201ENST00000254630 RASSF8Q8NHQ8 419 aa10.82□□□□□ -0.68
PTCD3-201ENST00000254630 SLKQ9H2G2 1235 aaPredicted RBP10.82□□□□□ -0.68
PTCD3-201ENST00000254630 TOMM22Q9NS69 142 aa10.82□□□□□ -0.68
PTCD3-201ENST00000254630 MYOM3Q5VTT5 1437 aa10.82□□□□□ -0.68
PTCD3-201ENST00000254630 ST20-MTHFSA0A0A6YYL1 179 aa10.82□□□□□ -0.68
PTCD3-201ENST00000254630 FOXD4L1Q9NU39 408 aa10.82□□□□□ -0.68
PTCD3-201ENST00000254630 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.82□□□□□ -0.68
PTCD3-201ENST00000254630 KIF16BQ96L93 1317 aa10.81□□□□□ -0.68
PTCD3-201ENST00000254630 NOC3LQ8WTT2 800 aaKnown RBP10.81□□□□□ -0.68
PTCD3-201ENST00000254630 GZF1Q9H116 711 aaPredicted RBP10.81□□□□□ -0.68
PTCD3-201ENST00000254630 DEKP35659 375 aaKnown RBP10.81□□□□□ -0.68
PTCD3-201ENST00000254630 TTC5Q8N0Z6 440 aa10.81□□□□□ -0.68
PTCD3-201ENST00000254630 CCDC34Q96HJ3 373 aa10.81□□□□□ -0.68
PTCD3-201ENST00000254630 VPS53Q5VIR6 699 aa10.81□□□□□ -0.68
PTCD3-201ENST00000254630 ST18O60284 1047 aa10.8□□□□□ -0.68
PTCD3-201ENST00000254630 MSH5O43196 834 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 RILPL2Q969X0 211 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 KIF21BO75037 1637 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 FYCO1Q9BQS8 1478 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 E9PSI1 815 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 PSME1Q06323 249 aa10.79□□□□□ -0.68
PTCD3-201ENST00000254630 MARCH6O60337 910 aa10.78□□□□□ -0.68
PTCD3-201ENST00000254630 FAM69CQ0P6D2 419 aa10.78□□□□□ -0.68
PTCD3-201ENST00000254630 AQRO60306 1485 aaKnown RBP eCLIP10.78□□□□□ -0.682e-7■■■■□ 23.8
PTCD3-201ENST00000254630 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.77□□□□□ -0.68
PTCD3-201ENST00000254630 FGD6Q6ZV73 1430 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 TEFQ10587 303 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 MIA2Q96PC5 1412 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 PHF14O94880 888 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 ZKSCAN2Q63HK3 967 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 NGEFQ8N5V2 710 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 NOL10Q9BSC4 688 aaKnown RBP10.77□□□□□ -0.69
PTCD3-201ENST00000254630 HECW1Q76N89 1606 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 H3BQV1 296 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 IFFO2Q5TF58 517 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 CREBRFQ8IUR6 639 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 DIAPH1O60610 1272 aaKnown RBP10.77□□□□□ -0.69
PTCD3-201ENST00000254630 ANKRD45Q5TZF3 282 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 TRIM34Q9BYJ4 488 aa10.77□□□□□ -0.69
PTCD3-201ENST00000254630 CENPQQ7L2Z9 268 aaPredicted RBP10.76□□□□□ -0.69
PTCD3-201ENST00000254630 ROCK1Q13464 1354 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 GOLGA6L3A6NEY3 463 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 EIF2S2P20042 333 aaKnown RBP10.76□□□□□ -0.69
PTCD3-201ENST00000254630 AMOTL1Q8IY63 956 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 KIF3AQ9Y496 699 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 MRC2Q9UBG0 1479 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 NEXNQ0ZGT2 675 aa10.76□□□□□ -0.69
PTCD3-201ENST00000254630 GRIN2BQ13224 1484 aa10.75□□□□□ -0.69
PTCD3-201ENST00000254630 LRRC9Q6ZRR7 1453 aa10.75□□□□□ -0.69
PTCD3-201ENST00000254630 FOXD4L5Q5VV16 416 aaPredicted RBP10.75□□□□□ -0.69
PTCD3-201ENST00000254630 FOXD4L4Q8WXT5 416 aaPredicted RBP10.75□□□□□ -0.69
PTCD3-201ENST00000254630 ELL2O00472 640 aaPredicted RBP10.75□□□□□ -0.69
PTCD3-201ENST00000254630 AEBP2Q6ZN18 517 aaPredicted RBP10.75□□□□□ -0.69
PTCD3-201ENST00000254630 BCL2L13Q9BXK5 485 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 EHBP1L1Q8N3D4 1523 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 IPO9Q96P70 1041 aaKnown RBP10.74□□□□□ -0.69
PTCD3-201ENST00000254630 NCOA2Q15596 1464 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 CASKIN1Q8WXD9 1431 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms