RNA–Protein interactions for RNA: ENST00000251775.8

SNX4-201, Transcript of sorting nexin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX4, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-201ENST00000251775 FAM135AQ9P2D6 1515 aa25.74■■□□□ 1.71
SNX4-201ENST00000251775 MRS2Q9HD23 443 aa25.73■■□□□ 1.71
SNX4-201ENST00000251775 MYO5CQ9NQX4 1742 aa25.73■■□□□ 1.71
SNX4-201ENST00000251775 MAST1Q9Y2H9 1570 aa25.73■■□□□ 1.71
SNX4-201ENST00000251775 DHX29Q7Z478 1369 aaKnown RBP25.71■■□□□ 1.71
SNX4-201ENST00000251775 KDM2AQ9Y2K7 1162 aa25.69■■□□□ 1.7
SNX4-201ENST00000251775 NOP58Q9Y2X3 529 aaKnown RBP25.68■■□□□ 1.7
SNX4-201ENST00000251775 POLR3GLQ9BT43 218 aa25.67■■□□□ 1.7
SNX4-201ENST00000251775 CARD11Q9BXL7 1154 aa25.67■■□□□ 1.7
SNX4-201ENST00000251775 UNC13BO14795 1591 aa25.67■■□□□ 1.7
SNX4-201ENST00000251775 DCAF11Q8TEB1 546 aa25.67■■□□□ 1.7
SNX4-201ENST00000251775 ARID4BQ4LE39 1312 aaPredicted RBP25.65■■□□□ 1.7
SNX4-201ENST00000251775 PLXNC1O60486 1568 aa25.63■■□□□ 1.69
SNX4-201ENST00000251775 ZCCHC11Q5TAX3 1644 aaKnown RBP25.63■■□□□ 1.69
SNX4-201ENST00000251775 PLEKHH2Q8IVE3 1493 aa25.62■■□□□ 1.69
SNX4-201ENST00000251775 PAK3O75914 559 aaPredicted RBP25.62■■□□□ 1.69
SNX4-201ENST00000251775 CLASP1Q7Z460 1538 aa25.62■■□□□ 1.69
SNX4-201ENST00000251775 PLA2R1Q13018 1463 aa25.59■■□□□ 1.69
SNX4-201ENST00000251775 CCDC144AA2RUR9 1427 aa25.59■■□□□ 1.69
SNX4-201ENST00000251775 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.59■■□□□ 1.694e-6■■■■□ 20.3
SNX4-201ENST00000251775 ST20-MTHFSA0A0A6YYL1 179 aa25.58■■□□□ 1.69
SNX4-201ENST00000251775 IQGAP3Q86VI3 1631 aa25.58■■□□□ 1.69
SNX4-201ENST00000251775 CNGB1Q14028 1251 aaPredicted RBP25.58■■□□□ 1.68
SNX4-201ENST00000251775 SMG6Q86US8 1419 aaKnown RBP25.57■■□□□ 1.68
SNX4-201ENST00000251775 PLCH2O75038 1416 aa25.57■■□□□ 1.68
SNX4-201ENST00000251775 NBR1Q14596 966 aa25.56■■□□□ 1.68
SNX4-201ENST00000251775 ROCK2O75116 1388 aaKnown RBP25.56■■□□□ 1.68
SNX4-201ENST00000251775 TRPM1Q7Z4N2 1603 aa25.55■■□□□ 1.68
SNX4-201ENST00000251775 UHRF1BP1LA0JNW5 1464 aa25.55■■□□□ 1.68
SNX4-201ENST00000251775 DUOX2Q9NRD8 1548 aa25.55■■□□□ 1.68
SNX4-201ENST00000251775 PRAG1Q86YV5 1406 aa25.54■■□□□ 1.68
SNX4-201ENST00000251775 RNF123Q5XPI4 1314 aa25.51■■□□□ 1.67
SNX4-201ENST00000251775 RGL3Q3MIN7 710 aa25.51■■□□□ 1.67
SNX4-201ENST00000251775 EFCAB2Q5VUJ9 269 aa25.5■■□□□ 1.67
SNX4-201ENST00000251775 MAGI2Q86UL8 1455 aa25.5■■□□□ 1.67
SNX4-201ENST00000251775 ABCC1P33527 1531 aa25.5■■□□□ 1.67
SNX4-201ENST00000251775 A2MP01023 1474 aa25.5■■□□□ 1.67
SNX4-201ENST00000251775 ERBINQ96RT1 1412 aa25.49■■□□□ 1.67
SNX4-201ENST00000251775 NUDCQ9Y266 331 aa25.48■■□□□ 1.67
SNX4-201ENST00000251775 E9PCH4 1651 aa25.48■■□□□ 1.67
SNX4-201ENST00000251775 TRAPPC8Q9Y2L5 1435 aa25.47■■□□□ 1.67
SNX4-201ENST00000251775 IPO9Q96P70 1041 aaKnown RBP25.46■■□□□ 1.67
SNX4-201ENST00000251775 NBPF1Q3BBV0 1214 aa25.45■■□□□ 1.67
SNX4-201ENST00000251775 CCDC136Q96JN2 1154 aa25.45■■□□□ 1.66
SNX4-201ENST00000251775 ANP32AP39687 249 aaKnown RBP25.43■■□□□ 1.66
SNX4-201ENST00000251775 ATP10AO60312 1499 aa25.43■■□□□ 1.66
SNX4-201ENST00000251775 GPRASP1Q5JY77 1395 aa25.42■■□□□ 1.66
SNX4-201ENST00000251775 PNISRQ8TF01 805 aaKnown RBP25.39■■□□□ 1.66
SNX4-201ENST00000251775 LAMC1P11047 1609 aa25.39■■□□□ 1.66
SNX4-201ENST00000251775 PRDM15P57071 1507 aaPredicted RBP25.37■■□□□ 1.65
SNX4-201ENST00000251775 TMC1Q8TDI8 760 aa25.36■■□□□ 1.65
SNX4-201ENST00000251775 ZBTB47Q9UFB7 747 aaPredicted RBP25.35■■□□□ 1.65
SNX4-201ENST00000251775 ARAP3Q8WWN8 1544 aa25.35■■□□□ 1.65
SNX4-201ENST00000251775 AFAP1Q8N556 730 aa25.35■■□□□ 1.65
SNX4-201ENST00000251775 EIF2AK4Q9P2K8 1649 aaKnown RBP25.35■■□□□ 1.65
SNX4-201ENST00000251775 SPAG9O60271 1321 aaKnown RBP25.34■■□□□ 1.65
SNX4-201ENST00000251775 ZFYVE16Q7Z3T8 1539 aa25.33■■□□□ 1.65
SNX4-201ENST00000251775 MYBBP1AQ9BQG0 1328 aaKnown RBP25.32■■□□□ 1.64
SNX4-201ENST00000251775 RTEL1-TNFRSF6BF6WH68 1400 aa25.32■■□□□ 1.64
SNX4-201ENST00000251775 KTN1Q86UP2 1357 aaKnown RBP25.32■■□□□ 1.64
SNX4-201ENST00000251775 RALBP1Q15311 655 aa25.32■■□□□ 1.64
SNX4-201ENST00000251775 RTL5Q5HYW3 569 aaPredicted RBP25.31■■□□□ 1.64
SNX4-201ENST00000251775 TESK2Q96S53 571 aa25.3■■□□□ 1.64
SNX4-201ENST00000251775 BRD4O60885 1362 aaPredicted RBP25.3■■□□□ 1.64
SNX4-201ENST00000251775 COL17A1Q9UMD9 1497 aaPredicted RBP25.3■■□□□ 1.64
SNX4-201ENST00000251775 WDR7Q9Y4E6 1490 aa25.29■■□□□ 1.64
SNX4-201ENST00000251775 LRPPRCP42704 1394 aaKnown RBP25.28■■□□□ 1.64
SNX4-201ENST00000251775 SENP3-EIF4A1A0A087X0R7 540 aa25.28■■□□□ 1.64
SNX4-201ENST00000251775 DISP3Q9P2K9 1392 aa25.28■■□□□ 1.64
SNX4-201ENST00000251775 RNF17Q9BXT8 1623 aaKnown RBP25.27■■□□□ 1.64
SNX4-201ENST00000251775 ABCA9Q8IUA7 1624 aa25.27■■□□□ 1.64
SNX4-201ENST00000251775 PER1O15534 1290 aaPredicted RBP25.26■■□□□ 1.63
SNX4-201ENST00000251775 DEPDC5O75140 1603 aa25.26■■□□□ 1.63
SNX4-201ENST00000251775 PARD3Q8TEW0 1356 aa25.25■■□□□ 1.63
SNX4-201ENST00000251775 FANCAO15360 1455 aa25.24■■□□□ 1.63
SNX4-201ENST00000251775 SPHKAPQ2M3C7 1700 aa25.24■■□□□ 1.63
SNX4-201ENST00000251775 TRPM2O94759 1503 aa25.23■■□□□ 1.63
SNX4-201ENST00000251775 INO80Q9ULG1 1556 aaPredicted RBP25.23■■□□□ 1.63
SNX4-201ENST00000251775 CEP152O94986 1710 aa25.22■■□□□ 1.63
SNX4-201ENST00000251775 ATP7AQ04656 1500 aa25.22■■□□□ 1.63
SNX4-201ENST00000251775 MADDQ8WXG6 1647 aa25.22■■□□□ 1.63
SNX4-201ENST00000251775 CLTCL1P53675 1640 aa25.2■■□□□ 1.62
SNX4-201ENST00000251775 PTPRTO14522 1441 aa25.2■■□□□ 1.62
SNX4-201ENST00000251775 TET3O43151 1660 aa25.2■■□□□ 1.62
SNX4-201ENST00000251775 NLRP13Q86W25 1043 aa25.18■■□□□ 1.62
SNX4-201ENST00000251775 TMF1P82094 1093 aa25.17■■□□□ 1.62
SNX4-201ENST00000251775 IQGAP1P46940 1657 aa25.16■■□□□ 1.62
SNX4-201ENST00000251775 VWDEQ8N2E2 1590 aa25.16■■□□□ 1.62
SNX4-201ENST00000251775 PANK3Q9H999 370 aa25.16■■□□□ 1.62
SNX4-201ENST00000251775 ADGRL1O94910 1474 aa25.15■■□□□ 1.62
SNX4-201ENST00000251775 SCAPERQ9BY12 1400 aa25.15■■□□□ 1.62
SNX4-201ENST00000251775 RRP1P56182 461 aaKnown RBP25.15■■□□□ 1.62
SNX4-201ENST00000251775 PRKCSHP14314 528 aaPredicted RBP25.13■■□□□ 1.61
SNX4-201ENST00000251775 WASHC2CQ9Y4E1 1318 aa25.13■■□□□ 1.61
SNX4-201ENST00000251775 ASXL2Q76L83 1435 aa25.13■■□□□ 1.61
SNX4-201ENST00000251775 TCERG1O14776 1098 aaKnown RBP25.13■■□□□ 1.61
SNX4-201ENST00000251775 CC2D1BQ5T0F9 858 aaKnown RBP25.13■■□□□ 1.61
SNX4-201ENST00000251775 KIF3BO15066 747 aa25.12■■□□□ 1.61
SNX4-201ENST00000251775 NPM2Q86SE8 214 aaKnown RBP25.12■■□□□ 1.61
SNX4-201ENST00000251775 EXOC6Q8TAG9 804 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms