RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 PDCL2Q8N4E4 241 aa15.95■□□□□ 0.14
VAMP4-201ENST00000236192 CCDC94Q9BW85 323 aaPredicted RBP15.94■□□□□ 0.14
VAMP4-201ENST00000236192 KIF20AO95235 890 aa15.94■□□□□ 0.14
VAMP4-201ENST00000236192 PLCD3Q8N3E9 789 aa15.94■□□□□ 0.14
VAMP4-201ENST00000236192 KIF3AQ9Y496 699 aa15.93■□□□□ 0.14
VAMP4-201ENST00000236192 CALCOCO1Q9P1Z2 691 aa15.93■□□□□ 0.14
VAMP4-201ENST00000236192 DCAF11Q8TEB1 546 aa15.92■□□□□ 0.14
VAMP4-201ENST00000236192 CGNL1Q0VF96 1302 aa15.92■□□□□ 0.14
VAMP4-201ENST00000236192 IPO4Q8TEX9 1081 aaKnown RBP15.91■□□□□ 0.14
VAMP4-201ENST00000236192 C22orf23Q9BZE7 217 aa15.91■□□□□ 0.14
VAMP4-201ENST00000236192 PPP4R3BQ5MIZ7 849 aa15.91■□□□□ 0.14
VAMP4-201ENST00000236192 CENPJQ9HC77 1338 aaPredicted RBP15.91■□□□□ 0.14
VAMP4-201ENST00000236192 CCDC7Q96M83 1385 aa15.91■□□□□ 0.14
VAMP4-201ENST00000236192 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
VAMP4-201ENST00000236192 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
VAMP4-201ENST00000236192 GOLGA6L4A6NEF3 574 aa15.9■□□□□ 0.14
VAMP4-201ENST00000236192 TPM3P06753 285 aa15.9■□□□□ 0.14
VAMP4-201ENST00000236192 OFD1O75665 1012 aa15.89■□□□□ 0.13
VAMP4-201ENST00000236192 KCNJ4P48050 445 aa15.89■□□□□ 0.13
VAMP4-201ENST00000236192 NUCB2P80303 420 aa15.88■□□□□ 0.13
VAMP4-201ENST00000236192 MCM5P33992 734 aa15.88■□□□□ 0.13
VAMP4-201ENST00000236192 MCCP23508 829 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 EIF3AQ14152 1382 aaKnown RBP15.87■□□□□ 0.13
VAMP4-201ENST00000236192 E9PSI1 815 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 TERF1P54274 439 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 CHMP4AQ9BY43 222 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 MCTP1Q6DN14 999 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 TIGD1Q96MW7 591 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 PANK2Q9BZ23 570 aa15.87■□□□□ 0.13
VAMP4-201ENST00000236192 XPCQ01831 940 aaPredicted RBP15.86■□□□□ 0.13
VAMP4-201ENST00000236192 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
VAMP4-201ENST00000236192 ARHGAP35Q9NRY4 1499 aa15.86■□□□□ 0.13
VAMP4-201ENST00000236192 NBPF1Q3BBV0 1214 aa15.86■□□□□ 0.13
VAMP4-201ENST00000236192 CDCA8Q53HL2 280 aa15.86■□□□□ 0.13
VAMP4-201ENST00000236192 CAVIN1Q6NZI2 390 aaKnown RBP15.85■□□□□ 0.13
VAMP4-201ENST00000236192 ST18O60284 1047 aa15.85■□□□□ 0.13
VAMP4-201ENST00000236192 NEUROD2Q15784 382 aa15.85■□□□□ 0.13
VAMP4-201ENST00000236192 PATL2C9JE40 543 aaKnown RBP15.84■□□□□ 0.13
VAMP4-201ENST00000236192 ZNF592Q92610 1267 aa15.84■□□□□ 0.13
VAMP4-201ENST00000236192 L3MBTL2Q969R5 705 aa15.84■□□□□ 0.13
VAMP4-201ENST00000236192 FMN1Q68DA7 1419 aa15.83■□□□□ 0.13
VAMP4-201ENST00000236192 ARGLU1Q9NWB6 273 aaPredicted RBP15.83■□□□□ 0.13
VAMP4-201ENST00000236192 ERICH4A6NGS2 130 aa15.82■□□□□ 0.12
VAMP4-201ENST00000236192 CIZ1Q9ULV3 898 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-201ENST00000236192 CCDC184Q52MB2 194 aa15.81■□□□□ 0.12
VAMP4-201ENST00000236192 PRIMPOLQ96LW4 560 aa15.81■□□□□ 0.12
VAMP4-201ENST00000236192 UTP14CQ5TAP6 766 aaKnown RBP15.8■□□□□ 0.12
VAMP4-201ENST00000236192 DEF6Q9H4E7 631 aa15.8■□□□□ 0.12
VAMP4-201ENST00000236192 VGLL3A8MV65 326 aa15.8■□□□□ 0.12
VAMP4-201ENST00000236192 CFAP53Q96M91 514 aa15.8■□□□□ 0.12
VAMP4-201ENST00000236192 ZNF777Q9ULD5 760 aaPredicted RBP15.8■□□□□ 0.12
VAMP4-201ENST00000236192 RNF214Q8ND24 703 aa15.79■□□□□ 0.12
VAMP4-201ENST00000236192 TSPY26PQ9H489 355 aa15.79■□□□□ 0.12
VAMP4-201ENST00000236192 NACADO15069 1562 aa15.79■□□□□ 0.12
VAMP4-201ENST00000236192 IFT57Q9NWB7 429 aa15.79■□□□□ 0.12
VAMP4-201ENST00000236192 RRBP1Q9P2E9 1410 aaKnown RBP15.78■□□□□ 0.12
VAMP4-201ENST00000236192 KIF7Q2M1P5 1343 aa15.77■□□□□ 0.12
VAMP4-201ENST00000236192 BRD4O60885 1362 aaPredicted RBP15.77■□□□□ 0.12
VAMP4-201ENST00000236192 MBD3O95983 291 aa15.77■□□□□ 0.11
VAMP4-201ENST00000236192 SPDYE4A6NLX3 237 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 DMTNQ08495 405 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 ITPRIPQ8IWB1 547 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 TMF1P82094 1093 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 HS1BP3Q53T59 392 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 FOXD4L5Q5VV16 416 aaPredicted RBP15.76■□□□□ 0.11
VAMP4-201ENST00000236192 FOXD4L4Q8WXT5 416 aaPredicted RBP15.76■□□□□ 0.11
VAMP4-201ENST00000236192 MPHOSPH9Q99550 1183 aa15.76■□□□□ 0.11
VAMP4-201ENST00000236192 U2SURPO15042 1029 aaKnown RBP15.75■□□□□ 0.11
VAMP4-201ENST00000236192 COG6Q9Y2V7 657 aa15.75■□□□□ 0.11
VAMP4-201ENST00000236192 CLUAP1Q96AJ1 413 aa15.75■□□□□ 0.11
VAMP4-201ENST00000236192 IPO8O15397 1037 aaKnown RBP15.74■□□□□ 0.11
VAMP4-201ENST00000236192 AK7Q96M32 723 aa15.74■□□□□ 0.11
VAMP4-201ENST00000236192 GTF2A1P52655 376 aaPredicted RBP15.73■□□□□ 0.11
VAMP4-201ENST00000236192 TPM4P67936 248 aa15.73■□□□□ 0.11
VAMP4-201ENST00000236192 LEKR1Q6ZMV7 388 aa15.73■□□□□ 0.11
VAMP4-201ENST00000236192 CCDC112Q8NEF3 446 aa15.73■□□□□ 0.11
VAMP4-201ENST00000236192 ARID3CA6NKF2 412 aa15.72■□□□□ 0.11
VAMP4-201ENST00000236192 AXDND1Q5T1B0 1012 aaPredicted RBP15.71■□□□□ 0.11
VAMP4-201ENST00000236192 BRD2P25440 801 aaKnown RBP15.71■□□□□ 0.11
VAMP4-201ENST00000236192 TBC1D2Q9BYX2 928 aa15.71■□□□□ 0.11
VAMP4-201ENST00000236192 TPD52L1Q16890 204 aaPredicted RBP15.71■□□□□ 0.11
VAMP4-201ENST00000236192 PNISRQ8TF01 805 aaKnown RBP15.71■□□□□ 0.11
VAMP4-201ENST00000236192 KIF27Q86VH2 1401 aa15.71■□□□□ 0.11
VAMP4-201ENST00000236192 PRPF40AO75400 957 aaKnown RBP15.7■□□□□ 0.1
VAMP4-201ENST00000236192 CLGNO14967 610 aa15.7■□□□□ 0.1
VAMP4-201ENST00000236192 CDCA7LQ96GN5 454 aa15.7■□□□□ 0.1
VAMP4-201ENST00000236192 HAP1P54257 671 aaPredicted RBP15.69■□□□□ 0.1
VAMP4-201ENST00000236192 CCDC18Q5T9S5 1454 aa15.69■□□□□ 0.1
VAMP4-201ENST00000236192 GPATCH11Q8N954 259 aa15.69■□□□□ 0.1
VAMP4-201ENST00000236192 ATP6V1DQ9Y5K8 247 aa15.69■□□□□ 0.1
VAMP4-201ENST00000236192 TRERF1Q96PN7 1200 aa15.68■□□□□ 0.1
VAMP4-201ENST00000236192 ZKSCAN5Q9Y2L8 839 aa15.68■□□□□ 0.1
VAMP4-201ENST00000236192 GNL2Q13823 731 aaKnown RBP15.68■□□□□ 0.1
VAMP4-201ENST00000236192 SKAP1Q86WV1 359 aa15.68■□□□□ 0.1
VAMP4-201ENST00000236192 RDXP35241 583 aaKnown RBP15.67■□□□□ 0.1
VAMP4-201ENST00000236192 FOXD1Q16676 465 aa15.67■□□□□ 0.1
VAMP4-201ENST00000236192 TRIM6-TRIM34B2RNG4 842 aa15.67■□□□□ 0.1
VAMP4-201ENST00000236192 USP8P40818 1118 aa15.67■□□□□ 0.1
VAMP4-201ENST00000236192 TRIM34Q9BYJ4 488 aa15.67■□□□□ 0.1
VAMP4-201ENST00000236192 CTR9Q6PD62 1173 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms