RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 CAMSAP2Q08AD1 1489 aa17.33■□□□□ 0.37
SF3B6-201ENST00000233468 CNTLNQ9NXG0 1405 aa17.33■□□□□ 0.36
SF3B6-201ENST00000233468 ZMYM3Q14202 1370 aa17.33■□□□□ 0.36
SF3B6-201ENST00000233468 PTPRTO14522 1441 aa17.32■□□□□ 0.36
SF3B6-201ENST00000233468 PLXNC1O60486 1568 aa17.32■□□□□ 0.36
SF3B6-201ENST00000233468 MBD5Q9P267 1494 aa17.31■□□□□ 0.36
SF3B6-201ENST00000233468 A2MP01023 1474 aa17.31■□□□□ 0.36
SF3B6-201ENST00000233468 CCDC141Q6ZP82 1450 aa17.31■□□□□ 0.36
SF3B6-201ENST00000233468 NCOA1Q15788 1441 aa17.3■□□□□ 0.36
SF3B6-201ENST00000233468 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
SF3B6-201ENST00000233468 CAMSAP1Q5T5Y3 1602 aa17.3■□□□□ 0.36
SF3B6-201ENST00000233468 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
SF3B6-201ENST00000233468 GGT6Q6P531 493 aa17.29■□□□□ 0.36
SF3B6-201ENST00000233468 RTEL1-TNFRSF6BF6WH68 1400 aa17.29■□□□□ 0.36
SF3B6-201ENST00000233468 NPATQ14207 1427 aa17.28■□□□□ 0.36
SF3B6-201ENST00000233468 NCKAP5LQ9HCH0 1330 aa17.27■□□□□ 0.36
SF3B6-201ENST00000233468 ADGBQ8N7X0 1667 aa17.27■□□□□ 0.36
SF3B6-201ENST00000233468 MYO3AQ8NEV4 1616 aa17.26■□□□□ 0.35
SF3B6-201ENST00000233468 FAM50AQ14320 339 aaKnown RBP17.26■□□□□ 0.35
SF3B6-201ENST00000233468 PPARGC1BQ86YN6 1023 aaKnown RBP17.26■□□□□ 0.35
SF3B6-201ENST00000233468 ARHGEF5Q12774 1597 aa17.24■□□□□ 0.35
SF3B6-201ENST00000233468 PTPRKQ15262 1439 aa17.24■□□□□ 0.35
SF3B6-201ENST00000233468 ZNF142P52746 1687 aaPredicted RBP17.24■□□□□ 0.35
SF3B6-201ENST00000233468 TCOF1Q13428 1488 aaKnown RBP17.24■□□□□ 0.35
SF3B6-201ENST00000233468 PTPN23Q9H3S7 1636 aa17.21■□□□□ 0.35
SF3B6-201ENST00000233468 CEP170BQ9Y4F5 1589 aaPredicted RBP17.21■□□□□ 0.35
SF3B6-201ENST00000233468 CACNB1Q02641 598 aaPredicted RBP17.21■□□□□ 0.35
SF3B6-201ENST00000233468 ILDR2Q71H61 639 aa17.21■□□□□ 0.35
SF3B6-201ENST00000233468 ZNF335Q9H4Z2 1342 aaPredicted RBP17.21■□□□□ 0.34
SF3B6-201ENST00000233468 DISP3Q9P2K9 1392 aa17.19■□□□□ 0.34
SF3B6-201ENST00000233468 SLC4A2P04920 1241 aa17.19■□□□□ 0.34
SF3B6-201ENST00000233468 DHX29Q7Z478 1369 aaKnown RBP17.18■□□□□ 0.34
SF3B6-201ENST00000233468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.18■□□□□ 0.34
SF3B6-201ENST00000233468 ABCC5O15440 1437 aa17.18■□□□□ 0.34
SF3B6-201ENST00000233468 DAPK1P53355 1430 aa17.17■□□□□ 0.34
SF3B6-201ENST00000233468 C1QBPQ07021 282 aaKnown RBP17.17■□□□□ 0.34
SF3B6-201ENST00000233468 FBXO31Q5XUX0 539 aaPredicted RBP17.17■□□□□ 0.34
SF3B6-201ENST00000233468 SHANK2Q9UPX8 1470 aa17.17■□□□□ 0.34
SF3B6-201ENST00000233468 KIF3BO15066 747 aa17.16■□□□□ 0.34
SF3B6-201ENST00000233468 DNMT1P26358 1616 aaKnown RBP17.16■□□□□ 0.34
SF3B6-201ENST00000233468 PLA2R1Q13018 1463 aa17.15■□□□□ 0.34
SF3B6-201ENST00000233468 ANKRD30AQ9BXX3 1397 aa17.15■□□□□ 0.34
SF3B6-201ENST00000233468 MAST1Q9Y2H9 1570 aa17.14■□□□□ 0.33
SF3B6-201ENST00000233468 IQSEC2Q5JU85 1478 aa17.13■□□□□ 0.33
SF3B6-201ENST00000233468 PKD2Q13563 968 aa17.13■□□□□ 0.33
SF3B6-201ENST00000233468 A2ML1A8K2U0 1454 aa17.12■□□□□ 0.33
SF3B6-201ENST00000233468 CHIC2Q9UKJ5 165 aa17.12■□□□□ 0.33
SF3B6-201ENST00000233468 RRP7BPQ9NSQ0 103 aa17.11■□□□□ 0.33
SF3B6-201ENST00000233468 KIF15Q9NS87 1388 aa17.11■□□□□ 0.33
SF3B6-201ENST00000233468 RRBP1Q9P2E9 1410 aaKnown RBP17.11■□□□□ 0.33
SF3B6-201ENST00000233468 U3KPZ7 1027 aaPredicted RBP17.1■□□□□ 0.33
SF3B6-201ENST00000233468 SPATA31D1Q6ZQQ2 1576 aa17.1■□□□□ 0.33
SF3B6-201ENST00000233468 POLR1AO95602 1720 aaPredicted RBP17.1■□□□□ 0.33
SF3B6-201ENST00000233468 UBAP1LF5GYI3 381 aa17.09■□□□□ 0.33
SF3B6-201ENST00000233468 TNRQ92752 1358 aa17.09■□□□□ 0.33
SF3B6-201ENST00000233468 KDM5DQ9BY66 1539 aa17.09■□□□□ 0.33
SF3B6-201ENST00000233468 CFAP65Q6ZU64 1925 aaKnown RBP17.08■□□□□ 0.33
SF3B6-201ENST00000233468 NEURL4Q96JN8 1562 aa17.08■□□□□ 0.32
SF3B6-201ENST00000233468 WASHC2CQ9Y4E1 1318 aa17.08■□□□□ 0.32
SF3B6-201ENST00000233468 DUOX2Q9NRD8 1548 aa17.07■□□□□ 0.32
SF3B6-201ENST00000233468 PZPP20742 1482 aa17.07■□□□□ 0.32
SF3B6-201ENST00000233468 ITGAEP38570 1179 aa17.07■□□□□ 0.32
SF3B6-201ENST00000233468 ADGRL2O95490 1459 aa17.05■□□□□ 0.32
SF3B6-201ENST00000233468 ERBINQ96RT1 1412 aa17.05■□□□□ 0.32
SF3B6-201ENST00000233468 ROCK1Q13464 1354 aa17.05■□□□□ 0.32
SF3B6-201ENST00000233468 SOCS7O14512 581 aa17.01■□□□□ 0.31
SF3B6-201ENST00000233468 FAM135AQ9P2D6 1515 aa17.01■□□□□ 0.31
SF3B6-201ENST00000233468 CROCC2H7BZ55 1655 aa17.01■□□□□ 0.31
SF3B6-201ENST00000233468 RNF17Q9BXT8 1623 aaKnown RBP17■□□□□ 0.31
SF3B6-201ENST00000233468 CEP152O94986 1710 aa17■□□□□ 0.31
SF3B6-201ENST00000233468 UGGT1Q9NYU2 1555 aa17■□□□□ 0.31
SF3B6-201ENST00000233468 KANK1Q14678 1352 aa17■□□□□ 0.31
SF3B6-201ENST00000233468 ANKRD50Q9ULJ7 1429 aa16.99■□□□□ 0.31
SF3B6-201ENST00000233468 ANKLE2Q86XL3 938 aa16.99■□□□□ 0.31
SF3B6-201ENST00000233468 MROH1Q8NDA8 1641 aa16.99■□□□□ 0.31
SF3B6-201ENST00000233468 ABCC3O15438 1527 aa16.98■□□□□ 0.31
SF3B6-201ENST00000233468 VWDEQ8N2E2 1590 aa16.98■□□□□ 0.31
SF3B6-201ENST00000233468 STRCP1A6NGW2 1772 aa16.97■□□□□ 0.31
SF3B6-201ENST00000233468 EIF2AK4Q9P2K8 1649 aaKnown RBP16.97■□□□□ 0.31
SF3B6-201ENST00000233468 PIP4K2BP78356 416 aa16.97■□□□□ 0.31
SF3B6-201ENST00000233468 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
SF3B6-201ENST00000233468 NLRP1Q9C000 1473 aa16.97■□□□□ 0.31
SF3B6-201ENST00000233468 DEPDC5O75140 1603 aa16.96■□□□□ 0.3
SF3B6-201ENST00000233468 ZC3H13Q5T200 1668 aaKnown RBP16.95■□□□□ 0.3
SF3B6-201ENST00000233468 HSPA1LP34931 641 aa16.95■□□□□ 0.3
SF3B6-201ENST00000233468 CPS1P31327 1500 aa16.95■□□□□ 0.3
SF3B6-201ENST00000233468 NPHP4O75161 1426 aaPredicted RBP16.95■□□□□ 0.3
SF3B6-201ENST00000233468 IQGAP1P46940 1657 aa16.94■□□□□ 0.3
SF3B6-201ENST00000233468 MED14O60244 1454 aa16.93■□□□□ 0.3
SF3B6-201ENST00000233468 ERVK-7P63135 1459 aa16.93■□□□□ 0.3
SF3B6-201ENST00000233468 ALKQ9UM73 1620 aa16.92■□□□□ 0.3
SF3B6-201ENST00000233468 UBR1Q8IWV7 1749 aa16.91■□□□□ 0.3
SF3B6-201ENST00000233468 TOM1O60784 492 aa16.9■□□□□ 0.3
SF3B6-201ENST00000233468 ACIN1Q9UKV3 1341 aaKnown RBP16.9■□□□□ 0.3
SF3B6-201ENST00000233468 FOXD4L1Q9NU39 408 aa16.89■□□□□ 0.29
SF3B6-201ENST00000233468 PRDM15P57071 1507 aaPredicted RBP16.87■□□□□ 0.29
SF3B6-201ENST00000233468 HFM1A2PYH4 1435 aa16.87■□□□□ 0.29
SF3B6-201ENST00000233468 MED1Q15648 1581 aaPredicted RBP16.86■□□□□ 0.29
SF3B6-201ENST00000233468 LTKP29376 864 aa16.86■□□□□ 0.29
SF3B6-201ENST00000233468 NAIPQ13075 1403 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms