RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ITSN2Q9NZM3 1697 aa16.59■□□□□ 0.25
NUP88-201ENST00000225696 RALBP1Q15311 655 aa16.58■□□□□ 0.25
NUP88-201ENST00000225696 PLIN1O60240 522 aa16.57■□□□□ 0.24
NUP88-201ENST00000225696 NBPF1Q3BBV0 1214 aa16.57■□□□□ 0.24
NUP88-201ENST00000225696 C9orf84Q5VXU9 1444 aa16.56■□□□□ 0.24
NUP88-201ENST00000225696 HNRNPMP52272 730 aaKnown RBP eCLIP16.56■□□□□ 0.24
NUP88-201ENST00000225696 PDE4AP27815 886 aa16.55■□□□□ 0.24
NUP88-201ENST00000225696 ARHGEF12Q9NZN5 1544 aa16.55■□□□□ 0.24
NUP88-201ENST00000225696 PER1O15534 1290 aaPredicted RBP16.54■□□□□ 0.24
NUP88-201ENST00000225696 FBLN2P98095 1184 aa16.54■□□□□ 0.24
NUP88-201ENST00000225696 CDC42BPAQ5VT25 1732 aa16.54■□□□□ 0.24
NUP88-201ENST00000225696 E9PCH4 1651 aa16.54■□□□□ 0.24
NUP88-201ENST00000225696 ADCY10Q96PN6 1610 aa16.54■□□□□ 0.24
NUP88-201ENST00000225696 NLRP13Q86W25 1043 aa16.53■□□□□ 0.24
NUP88-201ENST00000225696 PARD3Q8TEW0 1356 aa16.53■□□□□ 0.24
NUP88-201ENST00000225696 CEP170Q5SW79 1584 aa16.53■□□□□ 0.24
NUP88-201ENST00000225696 RGL3Q3MIN7 710 aa16.53■□□□□ 0.24
NUP88-201ENST00000225696 LAS1LQ9Y4W2 734 aaKnown RBP16.53■□□□□ 0.24
NUP88-201ENST00000225696 CC2D1BQ5T0F9 858 aaKnown RBP16.52■□□□□ 0.24
NUP88-201ENST00000225696 TCERG1O14776 1098 aaKnown RBP16.51■□□□□ 0.23
NUP88-201ENST00000225696 RTL5Q5HYW3 569 aaPredicted RBP16.51■□□□□ 0.23
NUP88-201ENST00000225696 BACH2Q9BYV9 841 aa16.51■□□□□ 0.23
NUP88-201ENST00000225696 KTN1Q86UP2 1357 aaKnown RBP16.51■□□□□ 0.23
NUP88-201ENST00000225696 ABCC10Q5T3U5 1492 aa16.5■□□□□ 0.23
NUP88-201ENST00000225696 PLEKHD1A6NEE1 506 aa16.5■□□□□ 0.23
NUP88-201ENST00000225696 TSPY4P0CV99 314 aa16.5■□□□□ 0.23
NUP88-201ENST00000225696 TSPY10P0CW01 314 aa16.5■□□□□ 0.23
NUP88-201ENST00000225696 JPH4Q96JJ6 628 aa16.5■□□□□ 0.23
NUP88-201ENST00000225696 PTPRGP23470 1445 aa16.49■□□□□ 0.23
NUP88-201ENST00000225696 KDM5DQ9BY66 1539 aa16.49■□□□□ 0.23
NUP88-201ENST00000225696 DISP3Q9P2K9 1392 aa16.48■□□□□ 0.23
NUP88-201ENST00000225696 PRAG1Q86YV5 1406 aa16.47■□□□□ 0.23
NUP88-201ENST00000225696 SHANK2Q9UPX8 1470 aa16.47■□□□□ 0.23
NUP88-201ENST00000225696 ATP10BO94823 1461 aa16.47■□□□□ 0.23
NUP88-201ENST00000225696 CRBNQ96SW2 442 aa16.47■□□□□ 0.23
NUP88-201ENST00000225696 C20orf194Q5TEA3 1177 aa16.46■□□□□ 0.23
NUP88-201ENST00000225696 CHD1O14646 1710 aa16.46■□□□□ 0.22
NUP88-201ENST00000225696 PDE3BQ13370 1112 aa16.45■□□□□ 0.22
NUP88-201ENST00000225696 TESK2Q96S53 571 aa16.45■□□□□ 0.22
NUP88-201ENST00000225696 PANK3Q9H999 370 aa16.45■□□□□ 0.22
NUP88-201ENST00000225696 IL27Q8NEV9 243 aa16.44■□□□□ 0.22
NUP88-201ENST00000225696 TRPM1Q7Z4N2 1603 aa16.44■□□□□ 0.22
NUP88-201ENST00000225696 FAM135AQ9P2D6 1515 aa16.44■□□□□ 0.22
NUP88-201ENST00000225696 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
NUP88-201ENST00000225696 NEFMP07197 916 aa16.44■□□□□ 0.22
NUP88-201ENST00000225696 PLA2R1Q13018 1463 aa16.43■□□□□ 0.22
NUP88-201ENST00000225696 ABCA8O94911 1581 aa16.42■□□□□ 0.22
NUP88-201ENST00000225696 MS4A1P11836 297 aa16.42■□□□□ 0.22
NUP88-201ENST00000225696 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.42■□□□□ 0.22
NUP88-201ENST00000225696 CCDC144AA2RUR9 1427 aa16.41■□□□□ 0.22
NUP88-201ENST00000225696 A2MP01023 1474 aa16.4■□□□□ 0.22
NUP88-201ENST00000225696 BLMP54132 1417 aaPredicted RBP16.4■□□□□ 0.22
NUP88-201ENST00000225696 COL17A1Q9UMD9 1497 aaPredicted RBP16.4■□□□□ 0.22
NUP88-201ENST00000225696 ADAMTS8Q9UP79 889 aa16.39■□□□□ 0.21
NUP88-201ENST00000225696 SLC4A3P48751 1232 aa16.38■□□□□ 0.21
NUP88-201ENST00000225696 GPRASP1Q5JY77 1395 aa16.38■□□□□ 0.21
NUP88-201ENST00000225696 SHROOM2Q13796 1616 aa16.37■□□□□ 0.21
NUP88-201ENST00000225696 RTN4Q9NQC3 1192 aaKnown RBP16.37■□□□□ 0.21
NUP88-201ENST00000225696 SAMD9LQ8IVG5 1584 aa16.36■□□□□ 0.21
NUP88-201ENST00000225696 ERBINQ96RT1 1412 aa16.35■□□□□ 0.21
NUP88-201ENST00000225696 ARHGEF5Q12774 1597 aa16.35■□□□□ 0.21
NUP88-201ENST00000225696 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
NUP88-201ENST00000225696 PLEKHH1Q9ULM0 1364 aa16.35■□□□□ 0.21
NUP88-201ENST00000225696 CCDC141Q6ZP82 1450 aa16.34■□□□□ 0.21
NUP88-201ENST00000225696 PRDM15P57071 1507 aaPredicted RBP16.34■□□□□ 0.21
NUP88-201ENST00000225696 KDM2BQ8NHM5 1336 aa16.34■□□□□ 0.21
NUP88-201ENST00000225696 ANO8Q9HCE9 1232 aaPredicted RBP16.33■□□□□ 0.2
NUP88-201ENST00000225696 WASHC2CQ9Y4E1 1318 aa16.33■□□□□ 0.2
NUP88-201ENST00000225696 CDC42BPBQ9Y5S2 1711 aa16.33■□□□□ 0.2
NUP88-201ENST00000225696 ZMYM4Q5VZL5 1548 aa16.33■□□□□ 0.2
NUP88-201ENST00000225696 DUSP27Q5VZP5 1158 aa16.31■□□□□ 0.2
NUP88-201ENST00000225696 MAGI2Q86UL8 1455 aa16.31■□□□□ 0.2
NUP88-201ENST00000225696 TMF1P82094 1093 aa16.31■□□□□ 0.2
NUP88-201ENST00000225696 USP35Q9P2H5 1018 aa16.3■□□□□ 0.2
NUP88-201ENST00000225696 PLEKHH2Q8IVE3 1493 aa16.3■□□□□ 0.2
NUP88-201ENST00000225696 SYCP2Q9BX26 1530 aa16.3■□□□□ 0.2
NUP88-201ENST00000225696 PPP2R1AP30153 589 aa16.29■□□□□ 0.2
NUP88-201ENST00000225696 MYO5CQ9NQX4 1742 aa16.28■□□□□ 0.2
NUP88-201ENST00000225696 INSRP06213 1382 aa16.28■□□□□ 0.2
NUP88-201ENST00000225696 PPM1GO15355 546 aaPredicted RBP16.28■□□□□ 0.2
NUP88-201ENST00000225696 WDR7Q9Y4E6 1490 aa16.27■□□□□ 0.2
NUP88-201ENST00000225696 C8orf34Q49A92 452 aa16.27■□□□□ 0.19
NUP88-201ENST00000225696 SPINK5Q9NQ38 1064 aaPredicted RBP16.27■□□□□ 0.19
NUP88-201ENST00000225696 ZNF521Q96K83 1311 aa16.26■□□□□ 0.19
NUP88-201ENST00000225696 AMER1Q5JTC6 1135 aaPredicted RBP16.26■□□□□ 0.19
NUP88-201ENST00000225696 NFKBIBQ15653 356 aa16.26■□□□□ 0.19
NUP88-201ENST00000225696 PREX2Q70Z35 1606 aa16.25■□□□□ 0.19
NUP88-201ENST00000225696 LAMC1P11047 1609 aa16.25■□□□□ 0.19
NUP88-201ENST00000225696 CCDC146Q8IYE0 955 aa16.25■□□□□ 0.19
NUP88-201ENST00000225696 UNC13BO14795 1591 aa16.25■□□□□ 0.19
NUP88-201ENST00000225696 CENPQQ7L2Z9 268 aaPredicted RBP16.24■□□□□ 0.19
NUP88-201ENST00000225696 DDRGK1Q96HY6 314 aa16.24■□□□□ 0.19
NUP88-201ENST00000225696 KNSTRNQ9Y448 316 aa16.24■□□□□ 0.19
NUP88-201ENST00000225696 RGS3P49796 1198 aa16.23■□□□□ 0.19
NUP88-201ENST00000225696 WDR43Q15061 677 aaKnown RBP eCLIP16.23■□□□□ 0.19
NUP88-201ENST00000225696 RSPH4AQ5TD94 716 aa16.23■□□□□ 0.19
NUP88-201ENST00000225696 BRPF3Q9ULD4 1205 aa16.23■□□□□ 0.19
NUP88-201ENST00000225696 TTC37Q6PGP7 1564 aa16.22■□□□□ 0.19
NUP88-201ENST00000225696 GOLGA2Q08379 1002 aa16.22■□□□□ 0.19
NUP88-201ENST00000225696 ARHGAP5Q13017 1502 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms