RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	PDX3	P38075	228 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	CFD1	P40558	293 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	YFL012W	P43580	148 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	EOS1	P53938	366 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	IRC15	Q02733	499 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	SIZ1	Q04195	904 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	MRX10	Q05648	414 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	RPL25	P04456	142 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
NUP116	YMR047C	NAR1	P23503	491 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	PHA2	P32452	334 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	HES1	P35843	434 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	NAT2	P37293	288 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	MAL32	P38158	584 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	PRE3	P38624	215 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	SEC24	P40482	926 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	MET28	P40573	187 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	IDP2	P41939	412 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	IRC7	P43623	340 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	MAL12	P53341	584 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	YNR021W	P53723	404 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	IBD2	P53892	351 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	GYP1	Q08484	637 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	PST1	Q12355	444 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	PAR32	Q12515	295 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	SAS5	Q99314	248 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	BUD5	P25300	642 aa	Predicted RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	TAH1	P25638	111 aa	Predicted RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	ARO7	P32178	256 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	BET3	P36149	193 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	LSM5	P40089	93 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	YIR035C	P40579	254 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	YMR209C	Q03648	457 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	SLF1	Q12034	447 aa	Known RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	ATP14	Q12349	124 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	AGC1	Q12482	902 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	STF2	P16965	84 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	DBP2	P24783	546 aa	Known RBP	4.55	□□□□□ -1.68
NUP116	YMR047C	TCA17	P32613	152 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	COA1	P40452	197 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	TIM21	P53220	239 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	ARE2	P53629	642 aa	Known RBP	4.55	□□□□□ -1.68
NUP116	YMR047C	ECM9	Q02202	377 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	TRS23	Q03784	219 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	RSF1	Q05043	376 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	HDA2	Q06629	674 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	GRE1	Q08969	168 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	RBD2	Q12270	262 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	BMT6	Q12291	365 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YLR111W	Q12528	110 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YPR014C	Q6B0W2	109 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YCL012C	Q8J0M4	134 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	COS2	P0CX12	379 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	COS3	P0CX13	379 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	DBR1	P24309	405 aa	Known RBP	4.55	□□□□□ -1.68
NUP116	YMR047C	LDS1	P31379	325 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	SCM4	P32564	187 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	SEF1	P34228	1148 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	OAR1	P35731	278 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	SLI1	P53304	468 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	SCS7	Q03529	384 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	CSN9	Q03981	162 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	CDA1	Q06702	301 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	FEX1	Q08913	375 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	TY1A-DR3	Q12441	440 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YOR032W-A	Q8TGS1	66 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YPT6	Q99260	215 aa		4.55	□□□□□ -1.68
NUP116	YMR047C	YPT1	P01123	206 aa	Known RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	SAR1	P20606	190 aa	Known RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	YCR051W	P25631	222 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	ATP11	P32453	318 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	IRC5	P43610	853 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	BIO3	P50277	480 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	UFD1	P53044	361 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	GOT1	Q03554	138 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	RAD30	Q04049	632 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	RCN2	Q12044	265 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	MDY2	Q12285	212 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	COR1	P07256	457 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	SEC53	P07283	254 aa	Known RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	PBN1	P25580	416 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	FAA1	P30624	700 aa	Known RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	JEN1	P36035	616 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	PTC7	P38797	343 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	PRP38	Q00723	242 aa	Predicted RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	SEN15	Q04675	128 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	PNP1	Q05788	311 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	YOR365C	Q08844	703 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	ACM1	Q08981	209 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	YMR030W-A	Q3E760	96 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	SLH1	P53327	1967 aa	Known RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	LAC1	P28496	418 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	PRO1	P32264	428 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	MSS1	P32559	526 aa	Predicted RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	YGL015C	P33199	130 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	FRE2	P36033	711 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	GAB1	P41733	394 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	GNA1	P43577	159 aa	Predicted RBP	4.54	□□□□□ -1.68
NUP116	YMR047C	YET3	Q07451	203 aa		4.54	□□□□□ -1.68
NUP116	YMR047C	COS7	Q07788	383 aa		4.54	□□□□□ -1.68

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