RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GRAMD2AQ8IUY3 354 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 STARD8Q92502 1023 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 LPIN2Q92539 896 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 HSPBAP1Q96EW2 488 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 CFAP36Q96G28 342 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 ZFRQ96KR1 1074 aaKnown RBP6.14□□□□□ -1.43
SCN1A-216ENST00000637968 C8orf48Q96LL4 319 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 THAP9Q9H5L6 903 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 CEP170Q5SW79 1584 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 PZPP20742 1482 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 RSPH10B2B2RC85 870 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TEX33O43247 280 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 SNX3O60493 162 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 SERPINI2O75830 405 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 RSPH10BP0C881 870 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 RPL5P46777 297 aaKnown RBP6.14□□□□□ -1.43
SCN1A-216ENST00000637968 IST1P53990 364 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 RELAQ04206 551 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 AP1B1Q10567 949 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 ATP1A4Q13733 1029 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 NFE2L2Q16236 605 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 BOLA3Q53S33 107 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 DEPDC1Q5TB30 811 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 KRT28Q7Z3Y7 464 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 RHOT2Q8IXI1 618 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 EME1Q96AY2 570 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 NLRP3Q96P20 1036 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 EHMT1Q9H9B1 1298 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TRIM10Q9UDY6 481 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 NEO1Q92859 1461 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 ZC3H4Q9UPT8 1303 aaKnown RBP6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TNFRSF10AO00220 468 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 SEMA3EO15041 775 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 AGTP01019 485 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 KRT7P08729 469 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 STRN3Q13033 797 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 ARL13BQ3SXY8 428 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 FLCNQ8NFG4 579 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TRIM63Q969Q1 353 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 HAPLN3Q96S86 360 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TRIM31Q9BZY9 425 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 PAIP1Q9H074 479 aaKnown RBP6.14□□□□□ -1.43
SCN1A-216ENST00000637968 METTL5Q9NRN9 209 aaKnown RBP6.14□□□□□ -1.43
SCN1A-216ENST00000637968 STMN3Q9NZ72 180 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 EPS15L1Q9UBC2 864 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TUBE1Q9UJT0 475 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 TMCC3Q9ULS5 477 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 CLIC4Q9Y696 253 aa6.14□□□□□ -1.43
SCN1A-216ENST00000637968 GOLGA8QA0A0J9YX86 632 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 CFAP69A5D8W1 941 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 GOLGA8OA6NCC3 632 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 GOLGA8NF8WBI6 632 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 GOLGA8RI6L899 631 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 CCDC22O60826 627 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF12P17014 697 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 MTIF2P46199 727 aaKnown RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 NFRKBQ6P4R8 1299 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PALB2Q86YC2 1186 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ICA1LQ8NDH6 482 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PBKQ96KB5 322 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 HEPHQ9BQS7 1158 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZFP69BQ9UJL9 534 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 NUP153P49790 1475 aaKnown RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PTCH1Q13635 1447 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZBED4O75132 1171 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 TARSP26639 723 aaKnown RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 COPB1P53618 953 aaKnown RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 C21orf59P57076 290 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 BTKQ06187 659 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 COL19A1Q14993 1142 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 RGS21Q2M5E4 152 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 SGO2Q562F6 1265 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 SYCP2LQ5T4T6 812 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 NEK5Q6P3R8 708 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 TREML1Q86YW5 311 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 RNF169Q8NCN4 708 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ATP2A3Q93084 1043 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 AZI2Q9H6S1 392 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 VTA1Q9NP79 307 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ECHDC1Q9NTX5 307 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 STK39Q9UEW8 545 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 HAO1Q9UJM8 370 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 MAN1B1Q9UKM7 699 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 CTNND2Q9UQB3 1225 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 DMTF1Q9Y222 760 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 GRID2IPA4D2P6 1211 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 KPNA4O00629 521 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 MAGEB3O15480 346 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PEX11AO75192 247 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 MOCS3O95396 460 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PRLP01236 227 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 FYNP06241 537 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PRLRP16471 622 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 AFMP43652 599 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF132P52740 706 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 PLOD1Q02809 727 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-216ENST00000637968 RPS6KA1Q15418 735 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF827Q17R98 1081 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 ZNF423Q2M1K9 1284 aa6.13□□□□□ -1.43
SCN1A-216ENST00000637968 CTC1Q2NKJ3 1217 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms