RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 COL4A4P53420 1690 aaPredicted RBP21.54■■□□□ 1.04
CLN3-260ENST00000637578 LYPLA2O95372 231 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 BMPR1AP36894 532 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 DNM2P50570 870 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 NPEPPSP55786 919 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 ORC2Q13416 577 aaPredicted RBP21.54■■□□□ 1.04
CLN3-260ENST00000637578 CMTR2Q8IYT2 770 aaKnown RBP21.54■■□□□ 1.04
CLN3-260ENST00000637578 MICALL1Q8N3F8 863 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 TMEM60Q9H2L4 133 aa21.54■■□□□ 1.04
CLN3-260ENST00000637578 DHX33Q9H6R0 707 aaKnown RBP21.54■■□□□ 1.04
CLN3-260ENST00000637578 DENND3A2RUS2 1198 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 DLL1O00548 723 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 RB1P06400 928 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 U2AF2P26368 475 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-260ENST00000637578 YWHABP31946 246 aaKnown RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 BTG3Q14201 252 aaPredicted RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 CTTNQ14247 550 aaKnown RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 NOSTRINQ8IVI9 506 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 EXOC8Q8IYI6 725 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 EIF2AK1Q9BQI3 630 aaKnown RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 RNF216Q9NWF9 866 aaPredicted RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 SUCLA2Q9P2R7 463 aaPredicted RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 THEGQ9P2T0 379 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 RWDD3Q9Y3V2 267 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 TXKP42681 527 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 OTUD6AQ7L8S5 288 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 NEK9Q8TD19 979 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 ZNF668Q96K58 619 aaPredicted RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 CEP170P1Q96L14 293 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 ELAC1Q9H777 363 aaKnown RBP21.53■■□□□ 1.04
CLN3-260ENST00000637578 PCDHB7Q9Y5E2 793 aa21.53■■□□□ 1.04
CLN3-260ENST00000637578 ZBTB39O15060 712 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 MCM7P33993 719 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 RFC5P40937 340 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 TRAPPC10P48553 1259 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 CYP4A11Q02928 519 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 ZNF410Q86VK4 478 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 TPH2Q8IWU9 490 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 NLRP7Q8WX94 980 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 SLC7A3Q8WY07 619 aa21.52■■□□□ 1.04
CLN3-260ENST00000637578 MRPL38Q96DV4 380 aaKnown RBP21.52■■□□□ 1.04
CLN3-260ENST00000637578 COL25A1Q9BXS0 654 aaPredicted RBP21.52■■□□□ 1.04
CLN3-260ENST00000637578 ATP2B1P20020 1258 aa21.51■■□□□ 1.03
CLN3-260ENST00000637578 GPM6BQ13491 265 aa21.51■■□□□ 1.03
CLN3-260ENST00000637578 GCOM2Q9BZD3 368 aaPredicted RBP21.51■■□□□ 1.03
CLN3-260ENST00000637578 TMEM161AQ9NX61 479 aa21.51■■□□□ 1.03
CLN3-260ENST00000637578 LRFN2Q9ULH4 789 aa21.51■■□□□ 1.03
CLN3-260ENST00000637578 MRPL42Q9Y6G3 142 aaKnown RBP21.51■■□□□ 1.03
CLN3-260ENST00000637578 VCANP13611 3396 aa21.51■■□□□ 1.03
CLN3-260ENST00000637578 RALGAPA2Q2PPJ7 1873 aa21.5■■□□□ 1.03
CLN3-260ENST00000637578 A0A087WZ62 844 aa21.5■■□□□ 1.03
CLN3-260ENST00000637578 ASB2Q96Q27 587 aa21.5■■□□□ 1.03
CLN3-260ENST00000637578 FDXACB1Q9BRP7 624 aaPredicted RBP21.5■■□□□ 1.03
CLN3-260ENST00000637578 PLVAPQ9BX97 442 aa21.5■■□□□ 1.03
CLN3-260ENST00000637578 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.5■■□□□ 1.03
CLN3-260ENST00000637578 GAS2O43903 313 aaKnown RBP21.49■■□□□ 1.03
CLN3-260ENST00000637578 CTNNB1P35222 781 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 GATMP50440 423 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 MRPS5P82675 430 aaKnown RBP21.49■■□□□ 1.03
CLN3-260ENST00000637578 ZNF174Q15697 407 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 PTPROQ16827 1216 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 TJAP1Q5JTD0 557 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 RHPN2Q8IUC4 686 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 C4orf32Q8N8J7 132 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 SCLT1Q96NL6 688 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 C11orf84Q9BUA3 381 aaPredicted RBP21.49■■□□□ 1.03
CLN3-260ENST00000637578 IFT122Q9HBG6 1241 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 ANKEF1Q9NU02 776 aa21.49■■□□□ 1.03
CLN3-260ENST00000637578 SPTBN5Q9NRC6 3674 aaKnown RBP21.49■■□□□ 1.03
CLN3-260ENST00000637578 POTEMA6NI47 508 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 CSDE1O75534 798 aaKnown RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 SPATA31C1P0DKV0 1188 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 XRCC6P12956 609 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLN3-260ENST00000637578 ZSCAN20P17040 1043 aaPredicted RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 GJB2P29033 226 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 POLGP54098 1239 aaPredicted RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 XKR9Q5GH70 373 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 TTC38Q5R3I4 469 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 FAM102BQ5T8I3 360 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 KSR1Q8IVT5 923 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 PRPF31Q8WWY3 499 aaKnown RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 P2RX5Q93086 422 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 TRAIPQ9BWF2 469 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 INO80BQ9C086 356 aaPredicted RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 CHST12Q9NRB3 414 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 COG5Q9UP83 839 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 SMC3Q9UQE7 1217 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 KIF3AQ9Y496 699 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 NLRC5Q86WI3 1866 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 FGFR4P22455 802 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 TOB1P50616 345 aaPredicted RBP21.48■■□□□ 1.03
CLN3-260ENST00000637578 NAALADL2Q58DX5 795 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 COL4A3BPQ9Y5P4 624 aa21.48■■□□□ 1.03
CLN3-260ENST00000637578 A0A0U1RQF3 1178 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 XIRP2A4UGR9 3374 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 OR52Z1P0C646 297 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 GNL2Q13823 731 aaKnown RBP21.47■■□□□ 1.03
CLN3-260ENST00000637578 EMC2Q15006 297 aa21.47■■□□□ 1.03
CLN3-260ENST00000637578 SKIV2LQ15477 1246 aaKnown RBP21.47■■□□□ 1.03
CLN3-260ENST00000637578 ECHDC2Q86YB7 292 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms