RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TEKT3Q9BXF9 490 aa18.23■□□□□ 0.51
CLN3-246ENST00000636228 TMEM117Q9H0C3 514 aa18.23■□□□□ 0.51
CLN3-246ENST00000636228 RNF216Q9NWF9 866 aaPredicted RBP18.23■□□□□ 0.51
CLN3-246ENST00000636228 DTNBO60941 627 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 ZSCAN20P17040 1043 aaPredicted RBP18.22■□□□□ 0.51
CLN3-246ENST00000636228 LAG3P18627 525 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 EVCP57679 992 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 SSRP1Q08945 709 aaKnown RBP18.22■□□□□ 0.51
CLN3-246ENST00000636228 STK3Q13188 491 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 DUSP6Q16828 381 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 HERC4Q5GLZ8 1057 aaPredicted RBP18.22■□□□□ 0.51
CLN3-246ENST00000636228 RUFY3Q7L099 469 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 ECHDC2Q86YB7 292 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 NLRP7Q8WX94 980 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 AIFM3Q96NN9 605 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 RIT2Q99578 217 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 APOL5Q9BWW9 433 aa18.22■□□□□ 0.51
CLN3-246ENST00000636228 KIAA1671Q9BY89 1806 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 HIDE1A8MVS5 230 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 FSCN2O14926 492 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 PSMD10O75832 226 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 DARSP14868 501 aaKnown RBP18.21■□□□□ 0.51
CLN3-246ENST00000636228 TBC1D8BQ0IIM8 1120 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 MTERF2Q49AM1 385 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 CLLU1OSQ5K130 101 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 LLGL2Q6P1M3 1020 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 KCNT2Q6UVM3 1135 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 FAM43BQ6ZT52 329 aaPredicted RBP18.21■□□□□ 0.51
CLN3-246ENST00000636228 MIER3Q7Z3K6 550 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 MRPS27Q92552 414 aaKnown RBP18.21■□□□□ 0.51
CLN3-246ENST00000636228 RPGRIP1Q96KN7 1286 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 ZSWIM6Q9HCJ5 1215 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 SH3GLB2Q9NR46 395 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 PCDHA4Q9UN74 947 aa18.21■□□□□ 0.51
CLN3-246ENST00000636228 C5orf42Q9H799 3197 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 LOXHD1Q8IVV2 1947 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 LOC730098B7Z3J9 87 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 REC8O95072 547 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 STBD1O95210 358 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 JAK3P52333 1124 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 TARBP2Q15633 366 aaKnown RBP18.2■□□□□ 0.5
CLN3-246ENST00000636228 LONRF3Q496Y0 759 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 Q4G0T1 1027 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 ALYREFQ86V81 257 aaKnown RBP18.2■□□□□ 0.5
CLN3-246ENST00000636228 TRIM22Q8IYM9 498 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 ABI1Q8IZP0 508 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 HELQQ8TDG4 1101 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 TCF25Q9BQ70 676 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 ENTPD7Q9NQZ7 604 aa18.2■□□□□ 0.5
CLN3-246ENST00000636228 SEPT9Q9UHD8 586 aaPredicted RBP18.2■□□□□ 0.5
CLN3-246ENST00000636228 PUF60Q9UHX1 559 aaKnown RBP18.2■□□□□ 0.5
CLN3-246ENST00000636228 CPLX1O14810 134 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 SFNP31947 248 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 TECP42680 631 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 PLCB3Q01970 1234 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 BLIDQ8IZY5 108 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 EDAQ92838 391 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 FBXL18Q96ME1 805 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 ZNF558Q96NG5 402 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 CEP89Q96ST8 783 aa18.19■□□□□ 0.5
CLN3-246ENST00000636228 A0A087WZ62 844 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 A0A0U1RQF3 1178 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 DDX11L8A8MPP1 907 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 NT5C1B-RDH14C9J2C7 533 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 M0R2N6 131 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 HOXA2O43364 376 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 ATF7P17544 494 aaPredicted RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 NPY5RQ15761 445 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 XKR3Q5GH77 459 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 PDE12Q6L8Q7 609 aaKnown RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 TMC7Q7Z402 723 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 ZNF598Q86UK7 904 aaKnown RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 LRRC43Q8N309 656 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 CDCA3Q99618 268 aaPredicted RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 FDXACB1Q9BRP7 624 aaPredicted RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 PHF7Q9BWX1 381 aaPredicted RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 NIFKQ9BYG3 293 aaKnown RBP18.18■□□□□ 0.5
CLN3-246ENST00000636228 S1PR5Q9H228 398 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 KCNJ14Q9UNX9 436 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 LZTS1Q9Y250 596 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 CYP46A1Q9Y6A2 500 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 PLXNA4Q9HCM2 1894 aa18.18■□□□□ 0.5
CLN3-246ENST00000636228 CYP3A7-CYP3A51PA0A087WV96 503 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 DEXIO95424 95 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 SP100P23497 879 aaPredicted RBP18.17■□□□□ 0.5
CLN3-246ENST00000636228 CYP3A7P24462 503 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 KCNC3Q14003 757 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 INF2Q27J81 1249 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 B3GNT9Q6UX72 402 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 KSR1Q8IVT5 923 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 ETNPPLQ8TBG4 499 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 LPPQ93052 612 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 GCOM2Q9BZD3 368 aaPredicted RBP18.17■□□□□ 0.5
CLN3-246ENST00000636228 SPG21Q9NZD8 308 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 CDH22Q9UJ99 828 aa18.17■□□□□ 0.5
CLN3-246ENST00000636228 EVPLQ92817 2033 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 EML1O00423 815 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 SLC37A4O43826 429 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 CA8P35219 290 aa18.16■□□□□ 0.5
CLN3-246ENST00000636228 KRT17Q04695 432 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms