RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 KIFAP3Q92845 792 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 HPS3Q969F9 1004 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 PKNOX2Q96KN3 472 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 DRC1Q96MC2 740 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 FIZ1Q96SL8 496 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 C17orf75Q9HAS0 396 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 ATP6V0A4Q9HBG4 840 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 KCND1Q9NSA2 647 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 PTPN22Q9Y2R2 807 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 SYNRGQ9UMZ2 1314 aa15.62■□□□□ 0.09
CLN3-242ENST00000635958 IGKV6-21A0A0C4DH24 114 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 SFI1A8K8P3 1242 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 HAS3O00219 553 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 IKBKBO14920 756 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 ADAMTS4O75173 837 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 INHAP05111 366 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 ZNF286BP0CG31 522 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 MAPTP10636 758 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 IRX5P78411 483 aaPredicted RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 SFR1Q86XK3 245 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 GUF1Q8N442 669 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 DHTKD1Q96HY7 919 aaPredicted RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 SPC25Q9HBM1 224 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 POLD4Q9HCU8 107 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 SLC39A2Q9NP94 309 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 LARSQ9P2J5 1176 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 COL1A2P08123 1366 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 GAS2O43903 313 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 PLS3P13797 630 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 POLGP54098 1239 aaPredicted RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 STIM1Q13586 685 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 EMC2Q15006 297 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 EPM2AIP1Q7L775 607 aaPredicted RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 DHX40Q8IX18 779 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 MYCT1Q8N699 235 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 KLHDC9Q8NEP7 349 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 ENOX1Q8TC92 643 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 SLC7A3Q8WY07 619 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 MED15Q96RN5 788 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 NTPCRQ9BSD7 190 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 ZHX3Q9H4I2 956 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 DDX20Q9UHI6 824 aaKnown RBP15.61■□□□□ 0.09
CLN3-242ENST00000635958 TRPC6Q9Y210 931 aa15.61■□□□□ 0.09
CLN3-242ENST00000635958 MSCO60682 206 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 INSRRP14616 1297 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 CST5P28325 142 aaPredicted RBP15.6■□□□□ 0.09
CLN3-242ENST00000635958 GSDMDP57764 484 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 PURAQ00577 322 aaKnown RBP15.6■□□□□ 0.09
CLN3-242ENST00000635958 BEX3Q00994 111 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 NCAPHQ15003 741 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 FAM102BQ5T8I3 360 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 JPH2Q9BR39 696 aaPredicted RBP15.6■□□□□ 0.09
CLN3-242ENST00000635958 STRA6Q9BX79 667 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 HMX1Q9NP08 348 aaPredicted RBP15.6■□□□□ 0.09
CLN3-242ENST00000635958 XPNPEP3Q9NQH7 507 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 KCNG1Q9UIX4 513 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 RWDD2AQ9UIY3 292 aa15.6■□□□□ 0.09
CLN3-242ENST00000635958 MYADML2A6NDP7 307 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 RIOK3O14730 519 aaKnown RBP15.59■□□□□ 0.09
CLN3-242ENST00000635958 PSMA7O14818 248 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 C6orf222P0C671 652 aaPredicted RBP15.59■□□□□ 0.09
CLN3-242ENST00000635958 ARL2P36404 184 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 TBC1D8BQ0IIM8 1120 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 GNASQ5JWF2 1037 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ODR4Q5SWX8 454 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 CENPPQ6IPU0 288 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 CCSAPQ6IQ19 270 aaPredicted RBP15.59■□□□□ 0.09
CLN3-242ENST00000635958 FOXR2Q6PJQ5 311 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MAEAQ7L5Y9 396 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ZNF720Q7Z2F6 126 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MYOCDQ8IZQ8 938 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 GLIS3Q8NEA6 775 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ZNF507Q8TCN5 953 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 SPIRE2Q8WWL2 714 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 KCNN1Q92952 543 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ST6GALNAC4Q9H4F1 302 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 GPRC5CQ9NQ84 441 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 IMPACTQ9P2X3 320 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 CENPFP49454 3210 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MYH11P35749 1972 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MAGEB2O15479 319 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ZEB2O60315 1214 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 KIF20AO95235 890 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 PGK1P00558 417 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MYL5Q02045 173 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 PAK1Q13153 545 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 BMT2Q1RMZ1 405 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 LHX8Q68G74 356 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 FAM178BQ8IXR5 827 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 ZNF710Q8N1W2 664 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 SLC17A8Q8NDX2 589 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 SCFD1Q8WVM8 642 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 KATNAL1Q9BW62 490 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 FGFBP2Q9BYJ0 223 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MRPL44Q9H9J2 332 aaKnown RBP15.59■□□□□ 0.09
CLN3-242ENST00000635958 TBC1D7Q9P0N9 293 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 MAPK8IP1Q9UQF2 711 aa15.59■□□□□ 0.09
CLN3-242ENST00000635958 RRN3P2A6NIE6 340 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 BECN2A8MW95 431 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 EIF3DO15371 548 aaKnown RBP eCLIP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms