RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	TBX21	Q9UL17	535 aa		10.53	□□□□□ -0.72
PDLIM5-223	ENST00000627587	SAMM50	Q9Y512	469 aa		10.53	□□□□□ -0.72
PDLIM5-223	ENST00000627587	TMEM150B	A6NC51	233 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF862	O60290	1169 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LYPLA2	O95372	231 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KRT18	P05783	430 aa	Known RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PTMA	P06454	111 aa	Known RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	C6orf222	P0C671	652 aa	Predicted RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KRT76	Q01546	638 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CENPP	Q6IPU0	288 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF746	Q6NUN9	644 aa	Predicted RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SPC24	Q8NBT2	197 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TIFA	Q96CG3	184 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DHTKD1	Q96HY7	919 aa	Predicted RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NACC1	Q96RE7	527 aa		10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MTIF3	Q9H2K0	278 aa	Known RBP	10.52	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ASB14	A6NK59	587 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	WDR64	B1ANS9	1081 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PSMA7	O14818	248 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	NKRF	O15226	690 aa	Known RBP eCLIP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZEB2	O60315	1214 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ARIH2	O95376	493 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ASGR1	P07306	291 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DNAJB2	P25686	324 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SFN	P31947	248 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	QARS	P47897	775 aa	Known RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CASP5	P51878	434 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	JAK3	P52333	1124 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MAPK7	Q13164	816 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PSMD2	Q13200	908 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TPD52L1	Q16890	204 aa	Predicted RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GNAS	Q5JWF2	1037 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FAM26F	Q5R3K3	315 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ANKRD40	Q6AI12	368 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SEPT14	Q6ZU15	432 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCDC65	Q8IXS2	484 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DAW1	Q8N136	415 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GUF1	Q8N442	669 aa	Known RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	FIZ1	Q96SL8	496 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GAS2L1	Q99501	681 aa	Predicted RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF576	Q9H609	170 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PRDM6	Q9NQX0	595 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SORBS3	O60504	671 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ATG7	O95352	703 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CDK11B	P21127	795 aa	Known RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	UBA1	P22314	1058 aa	Known RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCNE1	P24864	410 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	HOXD13	P35453	343 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RARRES1	P49788	294 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ACTR2	P61160	394 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GRIN2C	Q14957	1233 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PTPN21	Q16825	1174 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZCWPW2	Q504Y3	356 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	HS1BP3	Q53T59	392 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TJAP1	Q5JTD0	557 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TMEM240	Q5SV17	173 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TMEM63B	Q5T3F8	832 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RASIP1	Q5U651	963 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ABHD15	Q6UXT9	468 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ARMCX2	Q7L311	632 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	EPM2AIP1	Q7L775	607 aa	Predicted RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SFR1	Q86XK3	245 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CCDC60	Q8IWA6	550 aa	Predicted RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	C4orf19	Q8IY42	314 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RDM1	Q8NG50	284 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SCFD1	Q8WVM8	642 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	P2RX5	Q93086	422 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.51	□□□□□ -0.73	4e-6	■□□□□ 11.2
PDLIM5-223	ENST00000627587	SH2D3A	Q9BRG2	576 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	KCNF1	Q9H3M0	494 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZSWIM4	Q9H7M6	989 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	JPH1	Q9HDC5	661 aa	Predicted RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TBC1D7	Q9P0N9	293 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SLC9A2	Q9UBY0	812 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	MSRA	Q9UJ68	235 aa		10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DBR1	Q9UK59	544 aa	Known RBP	10.51	□□□□□ -0.73
PDLIM5-223	ENST00000627587	GOLGA6L6	A8MZA4	724 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SERPINC1	P01008	464 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ZNF131	P52739	623 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	TNFAIP2	Q03169	654 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	RAB30	Q15771	203 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ANO5	Q75V66	913 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CYFIP1	Q7L576	1253 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	EEPD1	Q7L9B9	569 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	DRC7	Q8IY82	874 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SMAP1	Q8IYB5	467 aa	Predicted RBP	10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	EEF2KMT	Q96G04	330 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587		Q9Y3F1	56 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PCDHA10	Q9Y5I2	948 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IGSF9B	Q9UPX0	1349 aa		10.5	□□□□□ -0.73
PDLIM5-223	ENST00000627587	IGKV6D-21	A0A0A0MT36	114 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587		A0A1B0GTH6	734 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	BICDL2	A1A5D9	508 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	LRRC10B	A6NIK2	292 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	SFI1	A8K8P3	1242 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	CBFA2T2	O43439	604 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	ATP4A	P20648	1035 aa		10.49	□□□□□ -0.73
PDLIM5-223	ENST00000627587	PTGS1	P23219	599 aa		10.49	□□□□□ -0.73

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