RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MIER3Q7Z3K6 550 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 THNSL1Q8IYQ7 743 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 LRRC43Q8N309 656 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 NIFKQ9BYG3 293 aaKnown RBP13.42□□□□□ -0.26
UPF3B-204ENST00000619445 CD320Q9NPF0 282 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 TLR9Q9NR96 1032 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 CHST12Q9NRB3 414 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 PPME1Q9Y570 386 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 MUC6Q6W4X9 2439 aa13.42□□□□□ -0.26
UPF3B-204ENST00000619445 MBTPS2O43462 519 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 CHMP2AO43633 222 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 ZNF862O60290 1169 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 PSMD10O75832 226 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 EOMESO95936 686 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 SKIP12755 728 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 DARSP14868 501 aaKnown RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 COASYQ13057 564 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 BMS1Q14692 1282 aaKnown RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 ANKRD1Q15327 319 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 TRMT1LQ7Z2T5 733 aaKnown RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 MICAL1Q8TDZ2 1067 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 MBOAT7Q96N66 472 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 MRPL9Q9BYD2 267 aaKnown RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 GCOM2Q9BZD3 368 aaPredicted RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 ADAMTS10Q9H324 1103 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 UNC45AQ9H3U1 944 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 IGFLR1Q9H665 355 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 TLE6Q9H808 572 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 NGRNQ9NPE2 291 aaKnown RBP13.41□□□□□ -0.26
UPF3B-204ENST00000619445 PDRG1Q9NUG6 133 aa13.41□□□□□ -0.26
UPF3B-204ENST00000619445 STK36Q9NRP7 1315 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 CCDC194A0A1B0GVG4 234 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 M0R2N6 131 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 TBX10O75333 385 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 FGF18O76093 207 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 IBSPP21815 317 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-204ENST00000619445 SFPQP23246 707 aaKnown RBP eCLIP13.4□□□□□ -0.26
UPF3B-204ENST00000619445 GPC3P51654 580 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 PLCB3Q01970 1234 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 KRT17Q04695 432 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 TARBP2Q15633 366 aaKnown RBP13.4□□□□□ -0.26
UPF3B-204ENST00000619445 FAM102BQ5T8I3 360 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 ZNF410Q86VK4 478 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 COLGALT1Q8NBJ5 622 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 SMRP1Q8NCR6 262 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 NLRP7Q8WX94 980 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 WASF1Q92558 559 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 MSLNLQ96KJ4 702 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 FAM20AQ96MK3 541 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 UIMC1Q96RL1 719 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 PLXNA4Q9HCM2 1894 aa13.4□□□□□ -0.26
UPF3B-204ENST00000619445 TYW1Q9NV66 732 aaKnown RBP13.4□□□□□ -0.26
UPF3B-204ENST00000619445 DDX25Q9UHL0 483 aaKnown RBP13.4□□□□□ -0.26
UPF3B-204ENST00000619445 A0A0U1RQF3 1178 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 ADAMTS3O15072 1205 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 TBX3O15119 743 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 DNAJB1P25685 340 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 NRIP1P48552 1158 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 ANAPC15P60006 121 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 PSMC5P62195 406 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 PPP4R3AQ6IN85 833 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 B3GNT9Q6UX72 402 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 ECHDC2Q86YB7 292 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 LRRC71Q8N4P6 559 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 ETNPPLQ8TBG4 499 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 KHSRPQ92945 711 aaKnown RBP eCLIP13.39□□□□□ -0.278e-7■■■□□ 16.1
UPF3B-204ENST00000619445 ZNF558Q96NG5 402 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 PPP1R16BQ96T49 567 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 TRAIPQ9BWF2 469 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 KCNH6Q9H252 994 aa13.39□□□□□ -0.27
UPF3B-204ENST00000619445 SLKQ9H2G2 1235 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-204ENST00000619445 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-204ENST00000619445 IGKV6-21A0A0C4DH24 114 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 RBAK-RBAKDNI3L0D1 243 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 GAS2O43903 313 aaKnown RBP13.38□□□□□ -0.27
UPF3B-204ENST00000619445 PPFIA3O75145 1194 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 FGFR1P11362 822 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 GATMP50440 423 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 DLX2Q07687 328 aaPredicted RBP13.38□□□□□ -0.27
UPF3B-204ENST00000619445 PPP2R5CQ13362 524 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 NEK8Q86SG6 692 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 MRPS27Q92552 414 aaKnown RBP13.38□□□□□ -0.27
UPF3B-204ENST00000619445 CWH43Q9H720 699 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 BRMS1Q9HCU9 246 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 C11orf16Q9NQ32 467 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 SPG21Q9NZD8 308 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 STK39Q9UEW8 545 aa13.38□□□□□ -0.27
UPF3B-204ENST00000619445 EDIL3O43854 480 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 TDP2O95551 362 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 HOXB8P17481 243 aaPredicted RBP13.37□□□□□ -0.27
UPF3B-204ENST00000619445 ATF7P17544 494 aaPredicted RBP13.37□□□□□ -0.27
UPF3B-204ENST00000619445 IRS1P35568 1242 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 QARSP47897 775 aaKnown RBP13.37□□□□□ -0.27
UPF3B-204ENST00000619445 RAB27AP51159 221 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 CLUL1Q15846 466 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 UGCGQ16739 394 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 DUSP6Q16828 381 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 MTERF2Q49AM1 385 aa13.37□□□□□ -0.27
UPF3B-204ENST00000619445 HERC4Q5GLZ8 1057 aaPredicted RBP13.37□□□□□ -0.27
UPF3B-204ENST00000619445 KCNT2Q6UVM3 1135 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms