RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SHISA4Q96DD7 197 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 GJD4Q96KN9 370 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 ZMAT2Q96NC0 199 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 ZSCAN10Q96SZ4 725 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 RNF41Q9H4P4 317 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 HESX1Q9UBX0 185 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 SAP30BPQ9UHR5 308 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 TFR2Q9UP52 801 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 PCDHB6Q9Y5E3 794 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 NFS1Q9Y697 457 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 RNF225M0QZC1 329 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 NVLO15381 856 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 PRPF3O43395 683 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 HEXIM1O94992 359 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 VDRP11473 427 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 ADARP55265 1226 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 SF3A3Q12874 501 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS39-214ENST00000614932 EARS2Q5JPH6 523 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 SLC10A5Q5PT55 438 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 GRAMD1CQ8IYS0 662 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 LSM14AQ8ND56 463 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 SLC17A8Q8NDX2 589 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 GATA6Q92908 595 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 NAP1L3Q99457 506 aaPredicted RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 EIF2AQ9BY44 585 aaKnown RBP11.04□□□□□ -0.64
VPS39-214ENST00000614932 ARHGEF38Q9NXL2 777 aa11.04□□□□□ -0.64
VPS39-214ENST00000614932 TMEM110-MUSTN1A8MSY1 372 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 IFNAR1P17181 557 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 FLT3P36888 993 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 HSD17B3P37058 310 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 TOB1P50616 345 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 DHX9Q08211 1270 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 NSUN2Q08J23 767 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS39-214ENST00000614932 MORC3Q14149 939 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SPATA1Q5VX52 437 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 DAAM2Q86T65 1068 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 LRRC34Q8IZ02 419 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SLC44A5Q8NCS7 719 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 CENPKQ9BS16 269 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 NSRP1Q9H0G5 558 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 DCP1AQ9NPI6 582 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 RABL2AQ9UBK7 228 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 LUC7L2Q9Y383 392 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 ESYT3A0FGR9 886 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 ATP9AO75110 1047 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 MMP1P03956 469 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 CYP1A1P04798 512 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 PORP16435 677 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 TCP1P17987 556 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 HSPA1LP34931 641 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 CCT6AP40227 531 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 GEMIN4P57678 1058 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 MDM2Q00987 491 aaPredicted RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 PDE1BQ01064 536 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 PTPAQ15257 358 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SAFBQ15424 915 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS39-214ENST00000614932 SEC23AQ15436 765 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SYDE2Q5VT97 1194 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 USP49Q70CQ1 688 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 NOSTRINQ8IVI9 506 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 OR2W6PQ8NHA6 318 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS39-214ENST00000614932 NUDCD1Q96RS6 583 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SRPK1Q96SB4 655 aaKnown RBP11.03□□□□□ -0.64
VPS39-214ENST00000614932 MAP3K14Q99558 947 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 NRDE2Q9H7Z3 1164 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 C4AP0C0L4 1744 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 C4BP0C0L5 1744 aa11.03□□□□□ -0.64
VPS39-214ENST00000614932 SEMA3EO15041 775 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 ADAMTS3O15072 1205 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 TIMM44O43615 452 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 ALDH2P05091 517 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 CDC25AP30304 524 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 CTNNA1P35221 906 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 LIN52Q52LA3 116 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 ZNF362Q5T0B9 420 aaPredicted RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 DAB2IPQ5VWQ8 1189 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 RESP18Q5W5W9 173 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 SLC2A7Q6PXP3 512 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 MDM1Q8TC05 714 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 SREK1Q8WXA9 508 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 FERMT2Q96AC1 680 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 MAML3Q96JK9 1138 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 PURBQ96QR8 312 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 RBM12Q9NTZ6 932 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 ZNF711Q9Y462 761 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 TSPY2A6NKD2 308 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 WNT7AO00755 349 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 TPPPO94811 219 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 POTEJP0CG39 1038 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 NFKBIAP25963 317 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 KPNB1Q14974 876 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 INAQ16352 499 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 SOGA3Q5TF21 947 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 NT5DC1Q5TFE4 455 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 CDKAL1Q5VV42 579 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 PDCD7Q8N8D1 485 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 DQX1Q8TE96 717 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 SH3RF3Q8TEJ3 882 aaPredicted RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 CASKIN2Q8WXE0 1202 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms