RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CALML4Q96GE6 196 aa18.42■□□□□ 0.54
CCDC28A-202ENST00000611852 CDK5RAP3Q96JB5 506 aa18.42■□□□□ 0.54
CCDC28A-202ENST00000611852 RCOR1Q9UKL0 485 aa18.42■□□□□ 0.54
CCDC28A-202ENST00000611852 SQORQ9Y6N5 450 aa18.42■□□□□ 0.54
CCDC28A-202ENST00000611852 LOXHD1Q8IVV2 1947 aa18.42■□□□□ 0.54
CCDC28A-202ENST00000611852 ACTN1P12814 892 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 CRYBB1P53674 252 aaPredicted RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 KARSQ15046 597 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 PADI6Q6TGC4 694 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 TSHZ1Q6ZSZ6 1077 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 RHPN2Q8IUC4 686 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 USP38Q8NB14 1042 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 TMEM40Q8WWA1 233 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 TCP11Q8WWU5 503 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 SYMPKQ92797 1274 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 RNPC3Q96LT9 517 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 OSMRQ99650 979 aa18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 IFIH1Q9BYX4 1025 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 AGO3Q9H9G7 860 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-202ENST00000611852 KRT85P78386 507 aa18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 CDC42EP1Q00587 391 aa18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 KSR1Q8IVT5 923 aa18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 PRPF31Q8WWY3 499 aaKnown RBP18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 PSPC1Q8WXF1 523 aaKnown RBP18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 SEPT8Q92599 483 aa18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 ZNF668Q96K58 619 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 CXXC1Q9P0U4 656 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 COL4A3BPQ9Y5P4 624 aa18.4■□□□□ 0.54
CCDC28A-202ENST00000611852 CUTAO60888 179 aa18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 CYP11B2P19099 503 aa18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 NCLP19338 710 aaKnown RBP18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 AXDND1Q5T1B0 1012 aaPredicted RBP18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 MCPH1Q8NEM0 835 aa18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 LRRC15Q8TF66 581 aa18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 NLRP7Q8WX94 980 aa18.39■□□□□ 0.54
CCDC28A-202ENST00000611852 LAMA3Q16787 3333 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 BAIAP3O94812 1187 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 PLCG1P19174 1290 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 CD52P31358 61 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 ARL2P36404 184 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 LAMTOR4Q0VGL1 99 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 MAEAQ7L5Y9 396 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 ZNF410Q86VK4 478 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 RASSF8Q8NHQ8 419 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 APBB2Q92870 758 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 SCLT1Q96NL6 688 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 MTIF3Q9H2K0 278 aaKnown RBP18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 CIZ1Q9ULV3 898 aaPredicted RBP18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 PADI3Q9ULW8 664 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 PCDHA7Q9UN72 937 aa18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 NOC2LQ9Y3T9 749 aaKnown RBP18.39■□□□□ 0.53
CCDC28A-202ENST00000611852 TCHHQ07283 1943 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 A0A087WZ62 844 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 ABHD14A-ACY1A0A1B0GW23 586 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 ASAP2O43150 1006 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 RPS6KA5O75582 802 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 DARSP14868 501 aaKnown RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 EIF4BP23588 611 aaKnown RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 TXLNAP40222 546 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 ME1P48163 572 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 PAK2Q13177 524 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 IKBKEQ14164 716 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 MXD4Q14582 209 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 SYT2Q8N9I0 419 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 LEO1Q8WVC0 666 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 SPATA32Q96LK8 384 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 NLRP4Q96MN2 994 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 FDXACB1Q9BRP7 624 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 POLR3FQ9H1D9 316 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 IFT122Q9HBG6 1241 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 GPRC5CQ9NQ84 441 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 BLOC1S4Q9NUP1 217 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 CCDC39Q9UFE4 941 aa18.38■□□□□ 0.53
CCDC28A-202ENST00000611852 ZBBXA8MT70 800 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 PLA2G4BP0C869 781 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 SLC12A3P55017 1021 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 HABP4Q5JVS0 413 aaKnown RBP18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 FAM102BQ5T8I3 360 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 RINT1Q6NUQ1 792 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 SHC4Q6S5L8 630 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 C1orf186Q6ZWK4 172 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 ASAP3Q8TDY4 903 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 RUSC1Q9BVN2 902 aa18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 GCOM2Q9BZD3 368 aaPredicted RBP18.37■□□□□ 0.53
CCDC28A-202ENST00000611852 EFCAB14O75071 495 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 SSBP05455 408 aaKnown RBP eCLIP18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 SRGAP2CP0DJJ0 459 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 GLRA2P23416 452 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 WDR5P61964 334 aaKnown RBP18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 NFX1Q12986 1120 aaKnown RBP18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 LRIT3Q3SXY7 679 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 FAM228AQ86W67 206 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 RNF149Q8NC42 400 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 RAD54LQ92698 747 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 SCAND2PQ9GZW5 306 aaPredicted RBP18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 ERVK-5Q9HDB9 667 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 ST3GAL5Q9UNP4 418 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 SLC4A7Q9Y6M7 1214 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 MICAL3Q7RTP6 2002 aa18.36■□□□□ 0.53
CCDC28A-202ENST00000611852 GPR182O15218 404 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms