RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 VAMP4O75379 141 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 PPM1BO75688 479 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 NTRK1P04629 796 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 ST5P78524 1137 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 AMPD2Q01433 879 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 GNPTABQ3T906 1256 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 HEATR6Q6AI08 1181 aaKnown RBP5.94□□□□□ -1.46
LINC00540-201ENST00000611481 ADAT2Q7Z6V5 191 aaKnown RBP5.94□□□□□ -1.46
LINC00540-201ENST00000611481 DCP2Q8IU60 420 aaKnown RBP5.94□□□□□ -1.46
LINC00540-201ENST00000611481 DNAJC10Q8IXB1 793 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 NIM1KQ8IY84 436 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 CNBD1Q8NA66 436 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 KISS1RQ969F8 398 aaPredicted RBP5.94□□□□□ -1.46
LINC00540-201ENST00000611481 GUCD1Q96NT3 240 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 HTATIP2Q9BUP3 242 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 BCL2L13Q9BXK5 485 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 KLHL25Q9H0H3 589 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 PPT2Q9UMR5 302 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 SIT1Q9Y3P8 196 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 SLC12A7Q9Y666 1083 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 MUC3AQ02505 3323 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 TJP1Q07157 1748 aa5.94□□□□□ -1.46
LINC00540-201ENST00000611481 SHTN1A0MZ66 631 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 C7orf72A4D263 438 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 ERVV-2B6SEH9 535 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 FUCA1P04066 466 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 NPR1P16066 1061 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 TM4SF4P48230 202 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 GRB10Q13322 594 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 SURF1Q15526 300 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 SLC9C1Q4G0N8 1177 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 HSP90AB2PQ58FF8 381 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 MCTP2Q6DN12 878 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 LIMS2Q7Z4I7 341 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 HDGFL2Q7Z4V5 671 aaPredicted RBP5.93□□□□□ -1.46
LINC00540-201ENST00000611481 ZC3H18Q86VM9 953 aaKnown RBP5.93□□□□□ -1.46
LINC00540-201ENST00000611481 CD99L2Q8TCZ2 262 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 SH3RF3Q8TEJ3 882 aaPredicted RBP5.93□□□□□ -1.46
LINC00540-201ENST00000611481 COG3Q96JB2 828 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 PSMD1Q99460 953 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 SCAND2PQ9GZW5 306 aaPredicted RBP5.93□□□□□ -1.46
LINC00540-201ENST00000611481 AP5M1Q9H0R1 490 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 CGGBP1Q9UFW8 167 aaPredicted RBP5.93□□□□□ -1.46
LINC00540-201ENST00000611481 ST6GALNAC2Q9UJ37 374 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 TSC22D4Q9Y3Q8 395 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 MRC1P22897 1456 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 NPC1L1Q9UHC9 1359 aa5.93□□□□□ -1.46
LINC00540-201ENST00000611481 EDC4Q6P2E9 1401 aaKnown RBP5.92□□□□□ -1.46
LINC00540-201ENST00000611481 CXCL9Q07325 125 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 CD300LDQ6UXZ3 194 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 SPRED1Q7Z699 444 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 MIB1Q86YT6 1006 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 ARHGEF39Q8N4T4 335 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 TMEM87AQ8NBN3 555 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 TXNDC5Q8NBS9 432 aaKnown RBP5.92□□□□□ -1.46
LINC00540-201ENST00000611481 MAFAQ8NHW3 353 aaPredicted RBP5.92□□□□□ -1.46
LINC00540-201ENST00000611481 GIPC2Q8TF65 315 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 ERO1AQ96HE7 468 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 LCORQ96JN0 433 aaPredicted RBP5.92□□□□□ -1.46
LINC00540-201ENST00000611481 CRBNQ96SW2 442 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 SYT3Q9BQG1 590 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 PHAXQ9H814 394 aaKnown RBP5.92□□□□□ -1.46
LINC00540-201ENST00000611481 ZBTB1Q9Y2K1 713 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 A0A1W2PP64 1363 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 CACNA1GO43497 2377 aa5.92□□□□□ -1.46
LINC00540-201ENST00000611481 ZNF609O15014 1411 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 CYR61O00622 381 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 LAMTOR5O43504 91 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 EIF5BO60841 1220 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 EPHX1P07099 455 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 SLC7A5Q01650 507 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 SREBF2Q12772 1141 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 LRIT3Q3SXY7 679 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 PLEKHH3Q7Z736 793 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 FAM26EQ8N5C1 309 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 DCPSQ96C86 337 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 RCC1LQ96I51 464 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 FGD4Q96M96 766 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 P2RX7Q99572 595 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 MRIQ9BWK5 157 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 IGSF5Q9NSI5 407 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 CNOT7Q9UIV1 285 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 PTCH2Q9Y6C5 1203 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 POLR2AP24928 1970 aaKnown RBP5.91□□□□□ -1.46
LINC00540-201ENST00000611481 TONSLQ96HA7 1378 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 SNED1Q8TER0 1413 aa5.91□□□□□ -1.46
LINC00540-201ENST00000611481 C9orf118A6NHY6 69 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 H7C1D1 291 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 OVOL3O00110 214 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 DDX3XO00571 662 aaKnown RBP eCLIP5.9□□□□□ -1.46
LINC00540-201ENST00000611481 PPIP5K2O43314 1243 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 CYP19A1P11511 503 aaPredicted RBP5.9□□□□□ -1.46
LINC00540-201ENST00000611481 CANXP27824 592 aaKnown RBP5.9□□□□□ -1.46
LINC00540-201ENST00000611481 ZNF76P36508 570 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 ITGA1P56199 1179 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 PRR31Q5SQ13 230 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 CRIP3Q6Q6R5 217 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 MOB2Q70IA6 237 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 PLEKHO2Q8TD55 490 aa5.9□□□□□ -1.46
LINC00540-201ENST00000611481 CDCA5Q96FF9 252 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms