RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 MTERF2Q49AM1 385 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 FAM20AQ96MK3 541 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 NIFKQ9BYG3 293 aaKnown RBP12.93□□□□□ -0.34
LINC00539-204ENST00000608957 SCAND2PQ9GZW5 306 aaPredicted RBP12.93□□□□□ -0.34
LINC00539-204ENST00000608957 NRBP2Q9NSY0 501 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 CFAP45Q9UL16 551 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 CEP131Q9UPN4 1083 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 A0A0C4DFX4 3053 aa12.93□□□□□ -0.34
LINC00539-204ENST00000608957 ADGRA3Q8IWK6 1321 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 IGKV6-21A0A0C4DH24 114 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 TBX3O15119 743 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 MAGEB2O15479 319 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 PRPF40AO75400 957 aaKnown RBP12.92□□□□□ -0.34
LINC00539-204ENST00000608957 RPS6KA5O75582 802 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 DGKIO75912 1065 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 GATMP50440 423 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 GPC3P51654 580 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 CRYBB1P53674 252 aaPredicted RBP12.92□□□□□ -0.34
LINC00539-204ENST00000608957 NLRP11P59045 1033 aaKnown RBP12.92□□□□□ -0.34
LINC00539-204ENST00000608957 DSC3Q14574 896 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 EPC2Q52LR7 807 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 XKR3Q5GH77 459 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 PLA2G4FQ68DD2 849 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 ANO5Q75V66 913 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 ZNF579Q8NAF0 562 aaKnown RBP12.92□□□□□ -0.34
LINC00539-204ENST00000608957 FBXO22Q8NEZ5 403 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 USP28Q96RU2 1077 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 SEPT9Q9UHD8 586 aaPredicted RBP12.92□□□□□ -0.34
LINC00539-204ENST00000608957 ST3GAL5Q9UNP4 418 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 AKT3Q9Y243 479 aa12.92□□□□□ -0.34
LINC00539-204ENST00000608957 VCANP13611 3396 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 GTPBP6O43824 516 aaPredicted RBP12.91□□□□□ -0.34
LINC00539-204ENST00000608957 FGFR4P22455 802 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 NPEPPSP55786 919 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 PSMC5P62195 406 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 NFX1Q12986 1120 aaKnown RBP12.91□□□□□ -0.34
LINC00539-204ENST00000608957 NPAS4Q8IUM7 802 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 TMEM192Q8IY95 271 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 LEO1Q8WVC0 666 aaPredicted RBP12.91□□□□□ -0.34
LINC00539-204ENST00000608957 SPATA32Q96LK8 384 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 FTHL17Q9BXU8 183 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 TMEM60Q9H2L4 133 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 RGL1Q9NZL6 768 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 THEGQ9P2T0 379 aa12.91□□□□□ -0.34
LINC00539-204ENST00000608957 TFIP11Q9UBB9 837 aaKnown RBP12.91□□□□□ -0.34
LINC00539-204ENST00000608957 C9IYK1 514 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 ZBTB39O15060 712 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 QARSP47897 775 aaKnown RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 SARSP49591 514 aaKnown RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 TFF2Q03403 129 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 TBC1D8BQ0IIM8 1120 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 EPHA7Q15375 998 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 SKOR2Q2VWA4 1001 aaPredicted RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 NCAPH2Q6IBW4 605 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 FIBCD1Q8N539 461 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 CLP1Q92989 425 aaKnown RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 DYDC2Q96IM9 177 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 MAP7D2Q96T17 732 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 NAP1L4Q99733 375 aaKnown RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 ADAM2Q99965 735 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 RGS18Q9NS28 235 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 RNF19AQ9NV58 838 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 MRPL42Q9Y6G3 142 aaKnown RBP12.9□□□□□ -0.34
LINC00539-204ENST00000608957 CUL9Q8IWT3 2517 aa12.9□□□□□ -0.34
LINC00539-204ENST00000608957 H3BNC9 293 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 TRAK2O60296 914 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 CSDE1O75534 798 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 YEATS4O95619 227 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 P4HBP07237 508 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 IBSPP21815 317 aaPredicted RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 NASPP49321 788 aaPredicted RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 UBE2HP62256 183 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 CEBPZQ03701 1054 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 GPM6BQ13491 265 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 CTTNQ14247 550 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 PAN2Q504Q3 1202 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 RILPL1Q5EBL4 403 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 SAMD11Q96NU1 681 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 MTMR9Q96QG7 549 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 LXNQ9BS40 222 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 CYP26B1Q9NR63 512 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 LMCD1Q9NZU5 365 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 HCSTQ9UBK5 93 aa12.89□□□□□ -0.35
LINC00539-204ENST00000608957 NOL7Q9UMY1 257 aaKnown RBP12.89□□□□□ -0.35
LINC00539-204ENST00000608957 C5orf67F2Z3F1 127 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 GPR182O15218 404 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 MAFO75444 373 aaPredicted RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 MBD3O95983 291 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 DARSP14868 501 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 EIF4BP23588 611 aaKnown RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 TMOD1P28289 359 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 CTNNB1P35222 781 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 BMPR1AP36894 532 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 FAM189BP81408 668 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 CYP4A11Q02928 519 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 BTG3Q14201 252 aaPredicted RBP12.88□□□□□ -0.35
LINC00539-204ENST00000608957 STK38Q15208 465 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 CALCRLQ16602 461 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 FAM102BQ5T8I3 360 aa12.88□□□□□ -0.35
LINC00539-204ENST00000608957 KSR1Q8IVT5 923 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms