RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MGEA5O60502 916 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 DGAT1O75907 488 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 ARL2P36404 184 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 POLGP54098 1239 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 SLC39A14Q15043 492 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 TMEM119Q4V9L6 283 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 USP49Q70CQ1 688 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 LINC00301Q8NCQ3 95 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 PRPF31Q8WWY3 499 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 SLC7A3Q8WY07 619 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 AK8Q96MA6 479 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 MAP7D2Q96T17 732 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 JPH2Q9BR39 696 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 IFT122Q9HBG6 1241 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 YBX2Q9Y2T7 364 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 STK24Q9Y6E0 443 aa21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 SPTBN5Q9NRC6 3674 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-221ENST00000599833 TCHHQ07283 1943 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 A0A087WZ62 844 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 E9PMD0 336 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 M0QZ92 97 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 GAS2O43903 313 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 ARHGEF15O94989 841 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 DARSP14868 501 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 ATP2A2P16615 1042 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 MARCKSP29966 332 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 RABGGTBP53611 331 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 CEBPZQ03701 1054 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 GPR153Q6NV75 609 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 HERC6Q8IVU3 1022 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 ZNF710Q8N1W2 664 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 SLC9A7Q96T83 725 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 MTRQ99707 1265 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 FDXACB1Q9BRP7 624 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 MTIF3Q9H2K0 278 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 ST3GAL5Q9UNP4 418 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 GINS2Q9Y248 185 aa21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 SRPRBQ9Y5M8 271 aaKnown RBP21.73■■□□□ 1.07
SHKBP1-221ENST00000599833 PRUNE2Q8WUY3 3088 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 ENPP3O14638 875 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 EFCAB14O75071 495 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 EIF4BP23588 611 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 LONP1P36776 959 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 DSC3Q14574 896 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 KRT79Q5XKE5 535 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 ZNF410Q86VK4 478 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 ASAP3Q8TDY4 903 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 CLIC6Q96NY7 704 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 CSRNP2Q9H175 543 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 ATP6V0A4Q9HBG4 840 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 GPRC5CQ9NQ84 441 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 TFIP11Q9UBB9 837 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 COL4A3BPQ9Y5P4 624 aa21.72■■□□□ 1.07
SHKBP1-221ENST00000599833 USO1O60763 962 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 CSDE1O75534 798 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 RPS6KA5O75582 802 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 EYA4O95677 639 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 MYOGP15173 224 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 GLRA2P23416 452 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 DNAJB2P25686 324 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 LAMTOR4Q0VGL1 99 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 PAK2Q13177 524 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 PADI6Q6TGC4 694 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 RHPN2Q8IUC4 686 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 EXOC8Q8IYI6 725 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 CHAMP1Q96JM3 812 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 TSPYL2Q9H2G4 693 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 BHMT2Q9H2M3 363 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 TTYH1Q9H313 450 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 MINDY3Q9H8M7 445 aa21.71■■□□□ 1.07
SHKBP1-221ENST00000599833 SLC26A4O43511 780 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 GJB5O95377 273 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 CYP11B2P19099 503 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 FGFR4P22455 802 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 DNM2P50570 870 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 BECN1Q14457 450 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 SPECC1Q5M775 1068 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 CABP7Q86V35 215 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 DAW1Q8N136 415 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 PSPC1Q8WXF1 523 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 BSNDQ8WZ55 320 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 TOP1MTQ969P6 601 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 EPSTI1Q96J88 318 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 CCSER1Q9C0I3 900 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 RC3H2Q9HBD1 1191 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 BLOC1S4Q9NUP1 217 aa21.7■■□□□ 1.06
SHKBP1-221ENST00000599833 YEATS4O95619 227 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 SLC12A3P55017 1021 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 HTRA4P83105 476 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 CDC42EP1Q00587 391 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 CAPSQ13938 189 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 IFNLR1Q8IU57 520 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 KCTD17Q8N5Z5 321 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 TCP11Q8WWU5 503 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 NLRP7Q8WX94 980 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 PCDHA11Q9Y5I1 949 aa21.69■■□□□ 1.06
SHKBP1-221ENST00000599833 LCHNA4D1U4 455 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 KCNJ6P48051 423 aa21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 DNM1Q05193 864 aaKnown RBP21.68■■□□□ 1.06
SHKBP1-221ENST00000599833 MAPK7Q13164 816 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms