RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	HOXD11	P31277	338 aa	Predicted RBP	11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	GPC3	P51654	580 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	USP11	P51784	963 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	UBE3A	Q05086	875 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	COASY	Q13057	564 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	DRP2	Q13474	957 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	PLPP4	Q5VZY2	271 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	LRRC55	Q6ZSA7	311 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	RUFY3	Q7L099	469 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	ECHDC2	Q86YB7	292 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	AIFM3	Q96NN9	605 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	CASD1	Q96PB1	797 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	RIT2	Q99578	217 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	SH2D3A	Q9BRG2	576 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	TEKT3	Q9BXF9	490 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	TMEM117	Q9H0C3	514 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	ELAC1	Q9H777	363 aa	Known RBP	11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	SH3GLB2	Q9NR46	395 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	NRBP2	Q9NSY0	501 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	PCDHA4	Q9UN74	947 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	WDR81	Q562E7	1941 aa		11.88	□□□□□ -0.51
LSM4-205	ENST00000597776	FSCN2	O14926	492 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	PSMD10	O75832	226 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	DARS	P14868	501 aa	Known RBP	11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	SFN	P31947	248 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	JAK3	P52333	1124 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	SSRP1	Q08945	709 aa	Known RBP	11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	TBC1D8B	Q0IIM8	1120 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	STK3	Q13188	491 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	TARBP2	Q15633	366 aa	Known RBP	11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	DUSP6	Q16828	381 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	MTERF2	Q49AM1	385 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	CLLU1OS	Q5K130	101 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	HFE2	Q6ZVN8	426 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	MIER3	Q7Z3K6	550 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	TRIM22	Q8IYM9	498 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	ABI1	Q8IZP0	508 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	NLRP7	Q8WX94	980 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	ZSWIM6	Q9HCJ5	1215 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	MUC6	Q6W4X9	2439 aa		11.87	□□□□□ -0.51
LSM4-205	ENST00000597776	HIDE1	A8MVS5	230 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776		M0R2N6	131 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	CPLX1	O14810	134 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	DTNB	O60941	627 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	STBD1	O95210	358 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	ZSCAN20	P17040	1043 aa	Predicted RBP	11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	ATF7	P17544	494 aa	Predicted RBP	11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	NPY5R	Q15761	445 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776		Q4G0T1	1027 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	LLGL2	Q6P1M3	1020 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	KCNT2	Q6UVM3	1135 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	BLID	Q8IZY5	108 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	LRRC43	Q8N309	656 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	ETNPPL	Q8TBG4	499 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	MRPS27	Q92552	414 aa	Known RBP	11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	ZNF558	Q96NG5	402 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	TCF25	Q9BQ70	676 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	ENTPD7	Q9NQZ7	604 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	CYP46A1	Q9Y6A2	500 aa		11.86	□□□□□ -0.51
LSM4-205	ENST00000597776	CYP3A7-CYP3A51P	A0A087WV96	503 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	LOC730098	B7Z3J9	87 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	HOXA2	O43364	376 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	SLC37A4	O43826	429 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	DEXI	O95424	95 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	CYP3A7	P24462	503 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	PLCB3	Q01970	1234 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	XKR3	Q5GH77	459 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	PDE12	Q6L8Q7	609 aa	Known RBP	11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	B3GNT9	Q6UX72	402 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	ZNF598	Q86UK7	904 aa	Known RBP	11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	RDM1	Q8NG50	284 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	HELQ	Q8TDG4	1101 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	RPGRIP1	Q96KN7	1286 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	CEP89	Q96ST8	783 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	CDCA3	Q99618	268 aa	Predicted RBP	11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	APOL5	Q9BWW9	433 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	NIFK	Q9BYG3	293 aa	Known RBP	11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	C22orf23	Q9BZE7	217 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	KCNJ14	Q9UNX9	436 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776	LZTS1	Q9Y250	596 aa		11.85	□□□□□ -0.51
LSM4-205	ENST00000597776		A0A087WZ62	844 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776		A0A0U1RQF3	1178 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	DDX11L8	A8MPP1	907 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	PPM1A	P35813	382 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	TEC	P42680	631 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	KCNC3	Q14003	757 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	INF2	Q27J81	1249 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	LONRF3	Q496Y0	759 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	PLA2G4F	Q68DD2	849 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	KSR1	Q8IVT5	923 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	ZNF710	Q8N1W2	664 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	DAGLB	Q8NCG7	672 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	SUSD6	Q92537	303 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	EDA	Q92838	391 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	ZNF274	Q96GC6	653 aa	Predicted RBP	11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	FBXL18	Q96ME1	805 aa		11.84	□□□□□ -0.51
LSM4-205	ENST00000597776	MBOAT7	Q96N66	472 aa		11.84	□□□□□ -0.51

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