RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 GPR149Q86SP6 731 aa17.67■□□□□ 0.42
LIG1-214ENST00000597146 TMEM87AQ8NBN3 555 aa17.67■□□□□ 0.42
LIG1-214ENST00000597146 HELQQ8TDG4 1101 aa17.67■□□□□ 0.42
LIG1-214ENST00000597146 SFXN1Q9H9B4 322 aa17.67■□□□□ 0.42
LIG1-214ENST00000597146 JADE2Q9NQC1 790 aa17.67■□□□□ 0.42
LIG1-214ENST00000597146 POTEMA6NI47 508 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 SPDYE4A6NLX3 237 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 CRYBB1P53674 252 aaPredicted RBP17.66■□□□□ 0.42
LIG1-214ENST00000597146 ATXN1P54253 815 aaKnown RBP17.66■□□□□ 0.42
LIG1-214ENST00000597146 BCAR1P56945 870 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 TBC1D8BQ0IIM8 1120 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 POTEGQ6S5H5 508 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 ECHDC2Q86YB7 292 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 TMEM169Q96HH4 297 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 DSCC1Q9BVC3 393 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 DLGAP2Q9P1A6 1054 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 WNT16Q9UBV4 365 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 ATRXP46100 2492 aa17.66■□□□□ 0.42
LIG1-214ENST00000597146 MYH15Q9Y2K3 1946 aa17.65■□□□□ 0.42
LIG1-214ENST00000597146 ZBTB42B2RXF5 422 aa17.65■□□□□ 0.42
LIG1-214ENST00000597146 GPR32O75388 356 aa17.65■□□□□ 0.42
LIG1-214ENST00000597146 FAM43BQ6ZT52 329 aaPredicted RBP17.65■□□□□ 0.42
LIG1-214ENST00000597146 BCL7CQ8WUZ0 217 aaPredicted RBP17.65■□□□□ 0.42
LIG1-214ENST00000597146 KCNH7Q9NS40 1196 aa17.65■□□□□ 0.42
LIG1-214ENST00000597146 IGSF9Q9P2J2 1179 aa17.65■□□□□ 0.42
LIG1-214ENST00000597146 IFIT3O14879 490 aaKnown RBP17.64■□□□□ 0.41
LIG1-214ENST00000597146 CTSAP10619 480 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 ITGB3BPQ13352 177 aaPredicted RBP17.64■□□□□ 0.41
LIG1-214ENST00000597146 BMS1Q14692 1282 aaKnown RBP17.64■□□□□ 0.41
LIG1-214ENST00000597146 LETM2Q2VYF4 491 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 C1orf210Q8IVY1 113 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 GPR152Q8TDT2 470 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 RRP36Q96EU6 259 aaKnown RBP17.64■□□□□ 0.41
LIG1-214ENST00000597146 NCDNQ9UBB6 729 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 RALYQ9UKM9 306 aaKnown RBP17.64■□□□□ 0.41
LIG1-214ENST00000597146 IRAK3Q9Y616 596 aa17.64■□□□□ 0.41
LIG1-214ENST00000597146 HBP1O60381 514 aa17.63■□□□□ 0.41
LIG1-214ENST00000597146 KINO60870 393 aaKnown RBP17.63■□□□□ 0.41
LIG1-214ENST00000597146 ZC3H11AO75152 810 aaKnown RBP eCLIP17.63■□□□□ 0.412e-8■■■■□ 25.1
LIG1-214ENST00000597146 C22orf31O95567 290 aa17.63■□□□□ 0.41
LIG1-214ENST00000597146 ALDH7A1P49419 539 aaKnown RBP17.63■□□□□ 0.41
LIG1-214ENST00000597146 SDF4Q9BRK5 362 aa17.63■□□□□ 0.41
LIG1-214ENST00000597146 NFASCO94856 1347 aa17.63■□□□□ 0.41
LIG1-214ENST00000597146 COL1A2P08123 1366 aa17.63■□□□□ 0.41
LIG1-214ENST00000597146 DCDC2BA2VCK2 349 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 DDX39AO00148 427 aaKnown RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 BACH1O14867 736 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 MAFGO15525 162 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 LRRN2O75325 713 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 CCNE2O96020 404 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 SRFP11831 508 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 GLULP15104 373 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 GBP2P32456 591 aaPredicted RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 WTAPQ15007 396 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 PTPN14Q15678 1187 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 KIAA0319Q5VV43 1072 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 ZNF598Q86UK7 904 aaKnown RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 CCDC60Q8IWA6 550 aaPredicted RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 MAML2Q8IZL2 1156 aaPredicted RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 RUFY2Q8WXA3 655 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 ZNF668Q96K58 619 aaPredicted RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 MYL10Q9BUA6 226 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 VN1R3Q9BXE9 311 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 SPZ1Q9BXG8 430 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 FOXQ1Q9C009 403 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 IL25Q9H293 177 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 PSTPIP2Q9H939 334 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 ARHGEF3Q9NR81 526 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 SEC63Q9UGP8 760 aaKnown RBP17.62■□□□□ 0.41
LIG1-214ENST00000597146 PCDHA6Q9UN73 950 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 SIT1Q9Y3P8 196 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 PCDHA8Q9Y5H6 950 aa17.62■□□□□ 0.41
LIG1-214ENST00000597146 IGKV6D-21A0A0A0MT36 114 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 SPDYE3A6NKU9 549 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 ATG7O95352 703 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 ZSCAN20P17040 1043 aaPredicted RBP17.61■□□□□ 0.41
LIG1-214ENST00000597146 SLC26A2P50443 739 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 CLCN3P51790 818 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 CLCN4P51793 760 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 VARS2Q5ST30 1063 aaKnown RBP17.61■□□□□ 0.41
LIG1-214ENST00000597146 DDX53Q86TM3 631 aaKnown RBP17.61■□□□□ 0.41
LIG1-214ENST00000597146 SLC44A3Q8N4M1 653 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 METTL13Q8N6R0 699 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 IGSF21Q96ID5 467 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 MXRA8Q9BRK3 442 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 MRPL9Q9BYD2 267 aaKnown RBP17.61■□□□□ 0.41
LIG1-214ENST00000597146 FAM208BQ5VWN6 2430 aa17.61■□□□□ 0.41
LIG1-214ENST00000597146 ERICH2A1L162 156 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 PLEKHA8P1O95397 391 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 SSBP05455 408 aaKnown RBP eCLIP17.6■□□□□ 0.41
LIG1-214ENST00000597146 ATP4AP20648 1035 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 FGFR4P22455 802 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 POLGP54098 1239 aaPredicted RBP17.6■□□□□ 0.41
LIG1-214ENST00000597146 GIT2Q14161 759 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 ZNF484Q5JVG2 852 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 TTC22Q5TAA0 569 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 PHLDB3Q6NSJ2 640 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 TRMT1LQ7Z2T5 733 aaKnown RBP17.6■□□□□ 0.41
LIG1-214ENST00000597146 PPFIBP1Q86W92 1011 aa17.6■□□□□ 0.41
LIG1-214ENST00000597146 CMTR1Q8N1G2 835 aaKnown RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms