RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PLCB1Q9NQ66 1216 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 DDX20Q9UHI6 824 aaKnown RBP16.55■□□□□ 0.24
UPF1-204ENST00000596842 CD2APQ9Y5K6 639 aa16.55■□□□□ 0.24
UPF1-204ENST00000596842 A6NNZ2 444 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 SMARCA1P28370 1054 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 DR1Q01658 176 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 ICA1Q05084 483 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 TUBB8Q3ZCM7 444 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 HS2ST1Q7LGA3 356 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 ACP6Q9NPH0 428 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 DAAM1Q9Y4D1 1078 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 BZW2Q9Y6E2 419 aaKnown RBP16.54■□□□□ 0.24
UPF1-204ENST00000596842 IRS2Q9Y4H2 1338 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 XIRP1Q702N8 1843 aaKnown RBP16.54■□□□□ 0.24
UPF1-204ENST00000596842 GOLGA6L10A0A0M3HER8 536 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 EDRF1Q3B7T1 1238 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 CDC42EP5Q6NZY7 148 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 FRMD5Q7Z6J6 570 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 FBXO11Q86XK2 927 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 SCFD2Q8WU76 684 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 DYDC1Q8WWB3 177 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 EIF2AK1Q9BQI3 630 aaKnown RBP16.54■□□□□ 0.24
UPF1-204ENST00000596842 EPHA7Q15375 998 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 ODR4Q5SWX8 454 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 LNX1Q8TBB1 728 aaPredicted RBP16.54■□□□□ 0.24
UPF1-204ENST00000596842 TBC1D31Q96DN5 1066 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 ERVK-5Q9HDB9 667 aa16.54■□□□□ 0.24
UPF1-204ENST00000596842 KIAA1551Q9HCM1 1747 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 FGFR4P22455 802 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 ECHS1P30084 290 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 VPS41P49754 854 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 AP1ARQ63HQ0 302 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 NT5DC3Q86UY8 548 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 FAM178BQ8IXR5 827 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 LRRC57Q8N9N7 239 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 DYDC2Q96IM9 177 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 TYW1Q9NV66 732 aaKnown RBP16.53■□□□□ 0.24
UPF1-204ENST00000596842 FRMD4BQ9Y2L6 1034 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 SCN7AQ01118 1682 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 TISP43B9A030 160 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 SPATA31C1P0DKV0 1188 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 KCNJ1P48048 391 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 SYCE1Q8N0S2 351 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 C18orf8Q96DM3 657 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 SEC16BQ96JE7 1060 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 AMNQ9BXJ7 453 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 MYH4Q9Y623 1939 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 ABCA3Q99758 1704 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 MSH4O15457 936 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 PAX7P23759 505 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 CLK2P49760 499 aaKnown RBP16.53■□□□□ 0.24
UPF1-204ENST00000596842 LRRC14Q15048 493 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 CBWD6Q4V339 395 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 CBWD3Q5JTY5 395 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 CBWD5Q5RIA9 395 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 GKAP1Q5VSY0 366 aaPredicted RBP16.53■□□□□ 0.24
UPF1-204ENST00000596842 NSMFQ6X4W1 530 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 PPP4R3CPQ6ZMV5 832 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 TMC3Q7Z5M5 1100 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 BTBD6Q96KE9 485 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 ASTN1O14525 1302 aa16.53■□□□□ 0.24
UPF1-204ENST00000596842 F5H6K3 240 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 MEIS2O14770 477 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 CPP00450 1065 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 KLRC3Q07444 240 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 PNMA8AQ86V59 439 aaPredicted RBP16.52■□□□□ 0.24
UPF1-204ENST00000596842 FBXO25Q8TCJ0 367 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 ACTRT1Q8TDG2 376 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 PSMD1Q99460 953 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 KLC4Q9NSK0 619 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 FERP16591 822 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 PSMC2P35998 433 aaKnown RBP16.52■□□□□ 0.24
UPF1-204ENST00000596842 MARCKSL1P49006 195 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 FAM133BQ5BKY9 247 aaKnown RBP16.52■□□□□ 0.24
UPF1-204ENST00000596842 DENND2CQ68D51 928 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 SYT2Q8N9I0 419 aaPredicted RBP16.52■□□□□ 0.24
UPF1-204ENST00000596842 SLC20A1Q8WUM9 679 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 TEKT1Q969V4 418 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 AZI2Q9H6S1 392 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 KCNMB3Q9NPA1 279 aa16.52■□□□□ 0.24
UPF1-204ENST00000596842 UBE2TQ9NPD8 197 aaPredicted RBP16.52■□□□□ 0.24
UPF1-204ENST00000596842 PDXKO00764 312 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 IL1R1P14778 569 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 MTMR3Q13615 1198 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 UBAP2Q5T6F2 1119 aaKnown RBP16.52■□□□□ 0.23
UPF1-204ENST00000596842 CCDC105Q8IYK2 499 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 MREGQ8N565 214 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 MICAL1Q8TDZ2 1067 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 METTL14Q9HCE5 456 aaKnown RBP16.52■□□□□ 0.23
UPF1-204ENST00000596842 SLC40A1Q9NP59 571 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 BAIAP2L1Q9UHR4 511 aa16.52■□□□□ 0.23
UPF1-204ENST00000596842 DDTLA6NHG4 134 aaPredicted RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 UBAP1LF5GYI3 381 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 OPLAHO14841 1288 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 RPA1P27694 616 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 MAP2K1Q02750 393 aaPredicted RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 GABPAQ06546 454 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 SNX1Q13596 522 aa16.51■□□□□ 0.23
UPF1-204ENST00000596842 TMX4Q9H1E5 349 aaPredicted RBP16.51■□□□□ 0.23
UPF1-204ENST00000596842 CCDC188H7C350 402 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms