RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 LIFRP42702 1097 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 LLGL1Q15334 1064 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 P3H1Q32P28 736 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 SPATA5Q8NB90 893 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 CENPTQ96BT3 561 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 PHACTR1Q9C0D0 580 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 BTBD7Q9P203 1132 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 DENND2AQ9ULE3 1009 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 TRIM33Q9UPN9 1127 aa13.21□□□□□ -0.29
LIG1-207ENST00000594759 CEP170BQ9Y4F5 1589 aaPredicted RBP13.21□□□□□ -0.29
LIG1-207ENST00000594759 I3L4J1 428 aa13.21□□□□□ -0.3
LIG1-207ENST00000594759 PGM1P36871 562 aa13.21□□□□□ -0.3
LIG1-207ENST00000594759 MAP3K21Q5TCX8 1036 aa13.21□□□□□ -0.3
LIG1-207ENST00000594759 DAB2IPQ5VWQ8 1189 aa13.21□□□□□ -0.3
LIG1-207ENST00000594759 NLRP10Q86W26 655 aa13.21□□□□□ -0.3
LIG1-207ENST00000594759 RBM12BQ8IXT5 1001 aaKnown RBP13.21□□□□□ -0.3
LIG1-207ENST00000594759 RNF26Q9BY78 433 aaPredicted RBP13.21□□□□□ -0.3
LIG1-207ENST00000594759 PDS5AQ29RF7 1337 aaKnown RBP13.21□□□□□ -0.3
LIG1-207ENST00000594759 RICTORQ6R327 1708 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 NDC80O14777 642 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 BAG3O95817 575 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 MYL1P05976 194 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 NAPAP54920 295 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 MDM2Q00987 491 aaPredicted RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 LONRF1Q17RB8 773 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 FAM83BQ5T0W9 1011 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 COL23A1Q86Y22 540 aaPredicted RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 MYOCDQ8IZQ8 938 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 RASGRP4Q8TDF6 673 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 NDUFA13Q9P0J0 144 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 RFX7Q2KHR2 1363 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 SHBGP04278 402 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 GJC1P36383 396 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 KCNMA1Q12791 1236 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 WASHC2DQ5SRD0 308 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 SESTD1Q86VW0 696 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 C1orf131Q8NDD1 294 aaKnown RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 HIPK4Q8NE63 616 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 TMEM237Q96Q45 408 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 PNMA3Q9UL41 463 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 SSU72P8A0A1W2PR75 194 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 LRRC10BA6NIK2 292 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 HNRNPCL1O60812 293 aaKnown RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 TOB1P50616 345 aaPredicted RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 MMEL1Q495T6 779 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 KLHDC7AQ5VTJ3 777 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 ANKS1AQ92625 1134 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 PREBQ9HCU5 417 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 DISC1Q9NRI5 854 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 TCEAL9Q9UHQ7 104 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 FAM187AA6NFU0 413 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 ETS2P15036 469 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 PHBP35232 272 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 LRRC41Q15345 812 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 HERC4Q5GLZ8 1057 aaPredicted RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 MTMR8Q96EF0 704 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 DDX50Q9BQ39 737 aaKnown RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 NYXQ9GZU5 481 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 ZWILCHQ9H900 591 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 LY9Q9HBG7 655 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 LMCD1Q9NZU5 365 aa13.2□□□□□ -0.3
LIG1-207ENST00000594759 CNOT8Q9UFF9 292 aaKnown RBP13.2□□□□□ -0.3
LIG1-207ENST00000594759 CCNT1O60563 726 aaKnown RBP13.19□□□□□ -0.3
LIG1-207ENST00000594759 HSPA6P17066 643 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 KIAA1755Q5JYT7 1200 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 TRIM55Q9BYV6 548 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 UNC45AQ9H3U1 944 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 GOLPH3Q9H4A6 298 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 KCNQ2O43526 872 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PDE8BO95263 885 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 GNA14O95837 355 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PBX1P40424 430 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 MLH1P40692 756 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 USP46P62068 366 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 IFI35P80217 286 aaPredicted RBP13.19□□□□□ -0.3
LIG1-207ENST00000594759 CBX3Q13185 183 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 TRADDQ15628 312 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PDXDC1Q6P996 788 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 BARGINQ6ZT62 677 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIG1-207ENST00000594759 IL1RAPL1Q9NZN1 696 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 COMMD3-BMI1R4GMX3 469 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PITPNM2Q9BZ72 1349 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 NRKQ7Z2Y5 1582 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 H7C1W4 665 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 LDHCP07864 332 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 HIBADHP31937 336 aaKnown RBP13.19□□□□□ -0.3
LIG1-207ENST00000594759 TRAPPC10P48553 1259 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 ESRRGP62508 458 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 FKBP3Q00688 224 aaKnown RBP13.19□□□□□ -0.3
LIG1-207ENST00000594759 NAB2Q15742 525 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 ANKRD40Q6AI12 368 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 PLEKHG4BQ96PX9 1271 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 DDX18Q9NVP1 670 aaKnown RBP13.19□□□□□ -0.3
LIG1-207ENST00000594759 ARHGAP20Q9P2F6 1191 aa13.19□□□□□ -0.3
LIG1-207ENST00000594759 NEDD4P46934 1319 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 ATF2P15336 505 aa13.18□□□□□ -0.3
LIG1-207ENST00000594759 EPHB2P29323 1055 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms