RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RABGGTBP53611 331 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 MXD4Q14582 209 aaPredicted RBP16.73■□□□□ 0.27
UPF1-202ENST00000594243 FAM173BQ6P4H8 233 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 MYOCDQ8IZQ8 938 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 PRPF31Q8WWY3 499 aaKnown RBP16.73■□□□□ 0.27
UPF1-202ENST00000594243 TOP1MTQ969P6 601 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 TMEM143Q96AN5 459 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 ERVK-5Q9HDB9 667 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 DDX19AQ9NUU7 478 aaKnown RBP16.73■□□□□ 0.27
UPF1-202ENST00000594243 DNM3Q9UQ16 869 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 COL4A3BPQ9Y5P4 624 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
UPF1-202ENST00000594243 A0A087WZ62 844 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 ARHGEF35A5YM69 484 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 PP2D1A8MPX8 630 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 SLC26A4O43511 780 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 GJB5O95377 273 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 ZSCAN22P10073 491 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 DARSP14868 501 aaKnown RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 CDC25AP30304 524 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 ECM1Q16610 540 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 FAM228AQ86W67 206 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 ZNF668Q96K58 619 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 NLRP4Q96MN2 994 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 ZNF396Q96N95 335 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 RAD9AQ99638 391 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 FDXACB1Q9BRP7 624 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 NT5C3AQ9H0P0 336 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 SLC28A3Q9HAS3 691 aa16.72■□□□□ 0.27
UPF1-202ENST00000594243 BMP2KQ9NSY1 1161 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 RNF216Q9NWF9 866 aaPredicted RBP16.72■□□□□ 0.27
UPF1-202ENST00000594243 SIP14410 1827 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 EVPLQ92817 2033 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 UBA7P41226 1012 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 CEBPZQ03701 1054 aaKnown RBP16.71■□□□□ 0.27
UPF1-202ENST00000594243 LAMTOR4Q0VGL1 99 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 PTPAQ15257 358 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 HYIQ5T013 277 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 PADI6Q6TGC4 694 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 KSR1Q8IVT5 923 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 DEFB123Q8N688 67 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 MCPH1Q8NEM0 835 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 CDK5RAP3Q96JB5 506 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 MMTAG2Q9BU76 263 aaKnown RBP16.71■□□□□ 0.27
UPF1-202ENST00000594243 TSPYL2Q9H2G4 693 aaPredicted RBP16.71■□□□□ 0.27
UPF1-202ENST00000594243 BHMT2Q9H2M3 363 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 SEMA6BQ9H3T3 888 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 XPNPEP1Q9NQW7 623 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 INSL6Q9Y581 213 aa16.71■□□□□ 0.27
UPF1-202ENST00000594243 TET1Q8NFU7 2136 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 DENND3A2RUS2 1198 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 USO1O60763 962 aaKnown RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 UPP2O95045 317 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 EYA4O95677 639 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 F13A1P00488 732 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 SRGAP2CP0DJJ0 459 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 ZSCAN20P17040 1043 aaPredicted RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 SFPQP23246 707 aaKnown RBP eCLIP16.7■□□□□ 0.26
UPF1-202ENST00000594243 ARL2P36404 184 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 POU5F1BQ06416 359 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 TFDP1Q14186 410 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 SLC39A14Q15043 492 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 ZRSR1Q15695 479 aaKnown RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 SRGAP1Q7Z6B7 1085 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 TMCO2Q7Z6W1 182 aaPredicted RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 RTN4RL1Q86UN2 441 aaPredicted RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 CABP7Q86V35 215 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 CALML4Q96GE6 196 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 USP28Q96RU2 1077 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 NKX2-4Q9H2Z4 354 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 TMX1Q9H3N1 280 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 ZNF576Q9H609 170 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 RGS18Q9NS28 235 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 C1orf112Q9NSG2 853 aa16.7■□□□□ 0.26
UPF1-202ENST00000594243 YBX2Q9Y2T7 364 aaKnown RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 SRPRBQ9Y5M8 271 aaKnown RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 MORC2Q9Y6X9 1032 aaPredicted RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 LAMA2P24043 3122 aaKnown RBP16.7■□□□□ 0.26
UPF1-202ENST00000594243 E9PMD0 336 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 RBAK-RBAKDNI3L0D1 243 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 STAG3L1P0CL83 205 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 MYOGP15173 224 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 CYP11B2P19099 503 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 FOXD4L5Q5VV16 416 aaPredicted RBP16.69■□□□□ 0.26
UPF1-202ENST00000594243 ATL3Q6DD88 541 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 FAM117BQ6P1L5 589 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 SLC24A5Q71RS6 500 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 RNF149Q8NC42 400 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 FOXD4L4Q8WXT5 416 aaPredicted RBP16.69■□□□□ 0.26
UPF1-202ENST00000594243 ADAM2Q99965 735 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 IFT122Q9HBG6 1241 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 CHST12Q9NRB3 414 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 COL6A3P12111 3177 aa16.69■□□□□ 0.26
UPF1-202ENST00000594243 CA3P07451 260 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 MARCKSP29966 332 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 PHKA2P46019 1235 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 NASPP49321 788 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 HTRA4P83105 476 aaPredicted RBP16.68■□□□□ 0.26
UPF1-202ENST00000594243 STK38Q15208 465 aa16.68■□□□□ 0.26
UPF1-202ENST00000594243 PCBP1Q15365 356 aaKnown RBP eCLIP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms