RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 PPM1EQ8WY54 764 aa20.69■□□□□ 0.9
SHKBP1-202ENST00000593764 SUCLA2Q9P2R7 463 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-202ENST00000593764 PPME1Q9Y570 386 aa20.69■□□□□ 0.9
SHKBP1-202ENST00000593764 C9IYK1 514 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 SARSP49591 514 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 DNM2P50570 870 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 CDC42EP1Q00587 391 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 NBR1Q14596 966 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 EPC2Q52LR7 807 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 OTUD6AQ7L8S5 288 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 JPH2Q9BR39 696 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 KIF3AQ9Y496 699 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 GTF3C3Q9Y5Q9 886 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 XIRP2A4UGR9 3374 aa20.68■□□□□ 0.9
SHKBP1-202ENST00000593764 DENND3A2RUS2 1198 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 CSDE1O75534 798 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 SPATA31C1P0DKV0 1188 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 FAM189BP81408 668 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 SLC24A5Q71RS6 500 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 KSR1Q8IVT5 923 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 TMEM192Q8IY95 271 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 FIBCD1Q8N539 461 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 NEK9Q8TD19 979 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 NLRP7Q8WX94 980 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 PRDM6Q9NQX0 595 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 ADGRA3Q8IWK6 1321 aa20.67■□□□□ 0.9
SHKBP1-202ENST00000593764 A0A087WZ62 844 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 GTPBP6O43824 516 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 OR52Z1P0C646 297 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 STAG3L1P0CL83 205 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 FGFR4P22455 802 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 RFC5P40937 340 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 TECP42680 631 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 XKR9Q5GH70 373 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 RHPN2Q8IUC4 686 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 FBXO22Q8NEZ5 403 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 SLC7A3Q8WY07 619 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 CLP1Q92989 425 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 TMEM143Q96AN5 459 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 SAMD11Q96NU1 681 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 FDXACB1Q9BRP7 624 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 C1orf112Q9NSG2 853 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 NOL7Q9UMY1 257 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 PCDHB6Q9Y5E3 794 aa20.66■□□□□ 0.9
SHKBP1-202ENST00000593764 A0A087WWV3 80 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 GATMP50440 423 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 POLGP54098 1239 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 ZNF410Q86VK4 478 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 CATSPER3Q86XQ3 398 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 EXOC8Q8IYI6 725 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 MICALL1Q8N3F8 863 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 PRPF31Q8WWY3 499 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 SCLT1Q96NL6 688 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 GCOM2Q9BZD3 368 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 IFT122Q9HBG6 1241 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 ANKEF1Q9NU02 776 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 LMCD1Q9NZU5 365 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 SMC3Q9UQE7 1217 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 PCDHB7Q9Y5E2 793 aa20.65■□□□□ 0.9
SHKBP1-202ENST00000593764 MED24O75448 989 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 CUL4AQ13619 759 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 BTG3Q14201 252 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 EMC2Q15006 297 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 MCTP1Q6DN14 999 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 CMTR2Q8IYT2 770 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 PIGOQ8TEQ8 1089 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 XPNPEP1Q9NQW7 623 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 BMP2KQ9NSY1 1161 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 COL4A3BPQ9Y5P4 624 aa20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 COL4A4P53420 1690 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-202ENST00000593764 C5orf67F2Z3F1 127 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 H3BNC9 293 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 GAS2O43903 313 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 XRCC6P12956 609 aaKnown RBP eCLIP20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 BMPR1AP36894 532 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 PTGDRQ13258 359 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 FAM102BQ5T8I3 360 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 NLRP4Q96MN2 994 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 POLR3CQ9BUI4 534 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 ELAC1Q9H777 363 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 TUFT1Q9NNX1 390 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 LRFN2Q9ULH4 789 aa20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 MRPL42Q9Y6G3 142 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-202ENST00000593764 ZSCAN20P17040 1043 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 IBSPP21815 317 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 RARRES1P49788 294 aa20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 FXR2P51116 673 aaKnown RBP eCLIP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 LAMTOR4Q0VGL1 99 aa20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 PAN2Q504Q3 1202 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 PSPC1Q8WXF1 523 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 TMEM161AQ9NX61 479 aa20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 NLRC5Q86WI3 1866 aa20.62■□□□□ 0.89
SHKBP1-202ENST00000593764 MYO7AQ13402 2215 aa20.61■□□□□ 0.89
SHKBP1-202ENST00000593764 H3BQV1 296 aa20.61■□□□□ 0.89
SHKBP1-202ENST00000593764 RB1P06400 928 aa20.61■□□□□ 0.89
SHKBP1-202ENST00000593764 RPA1P27694 616 aa20.61■□□□□ 0.89
SHKBP1-202ENST00000593764 CTNNB1P35222 781 aa20.61■□□□□ 0.89
SHKBP1-202ENST00000593764 GPM6BQ13491 265 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms