RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 FAM196BA6NMK8 535 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 ATP1A1P05023 1023 aaKnown RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 INHBAP08476 426 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 RWDD2BP57060 319 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 SF3B3Q15393 1217 aaKnown RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TTLL3Q9Y4R7 772 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 PIK3C2BO00750 1634 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 CD163L1Q9NR16 1453 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 ARHGAP42A6NI28 874 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 RFX5P48382 616 aaPredicted RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 ANTXR2P58335 489 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 NFRKBQ6P4R8 1299 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 KCNV1Q6PIU1 500 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 RPAP3Q9H6T3 665 aaPredicted RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 ZNF70Q9UC06 446 aaPredicted RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 SYNGAP1Q96PV0 1343 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 ENTPD3O75355 529 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 SLCO1A2P46721 670 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 MRPS25P82663 173 aaKnown RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 KCNH2Q12809 1159 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TRIM42Q8IWZ5 723 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 BBS5Q8N3I7 341 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TXLNGQ9NUQ3 528 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 DNAJC12Q9UKB3 198 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 SETD1BQ9UPS6 1966 aaKnown RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TXNDC9O14530 226 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 YWHAGP61981 247 aaKnown RBP eCLIP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 PPP2R5DQ14738 602 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TMED2Q15363 201 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TRIM50Q86XT4 487 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 NLRP4Q96MN2 994 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 KATNAL1Q9BW62 490 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 VIPAS39Q9H9C1 493 aa13.67□□□□□ -0.22
DNMT1-228ENST00000592705 TOPORSQ9NS56 1045 aaPredicted RBP13.67□□□□□ -0.22
DNMT1-228ENST00000592705 CAMTA2O94983 1202 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 NR3C1P04150 777 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 BSPRYQ5W0U4 402 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 TAF6LQ9Y6J9 622 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 DCDC2CA8MYV0 355 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PLSCR1O15162 318 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 KRT10P13645 584 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 ITPK1Q13572 414 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 CTTNQ14247 550 aaKnown RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 ZKSCAN8Q15776 578 aaPredicted RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 TTBK2Q6IQ55 1244 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 GSPT2Q8IYD1 628 aaKnown RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 TC2NQ8N9U0 490 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 CCSER1Q9C0I3 900 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 DIP2CQ9Y2E4 1556 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 GCKP35557 465 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 SLC12A2P55011 1212 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 SH3BGRP55822 239 aaPredicted RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 VSNL1P62760 191 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 MMS22LQ6ZRQ5 1243 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 ARRDC4Q8NCT1 418 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PCDHA6Q9UN73 950 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PCDHA8Q9Y5H6 950 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 ABCB11O95342 1321 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 CLTCQ00610 1675 aaKnown RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 NEURL4Q96JN8 1562 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PP2D1A8MPX8 630 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 H7C0C1 242 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 CASQ2O14958 399 aaPredicted RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 KRT1P04264 644 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 ATP5OP48047 213 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 MAP1SQ66K74 1059 aaPredicted RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 CYP4F22Q6NT55 531 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 RBM43Q6ZSC3 357 aaKnown RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PDZD4Q76G19 769 aaPredicted RBP13.66□□□□□ -0.22
DNMT1-228ENST00000592705 SFR1Q86XK3 245 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 RFX6Q8HWS3 928 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 YAF2Q8IY57 180 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 FAM151AQ8WW52 585 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 PPP1R16BQ96T49 567 aa13.66□□□□□ -0.22
DNMT1-228ENST00000592705 SPDYE16A6NNV3 312 aaPredicted RBP13.65□□□□□ -0.22
DNMT1-228ENST00000592705 CHGBP05060 677 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 MTMR2Q13614 643 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 RCSD1Q6JBY9 416 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 PDXDC1Q6P996 788 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 SRBD1Q8N5C6 995 aaKnown RBP13.65□□□□□ -0.22
DNMT1-228ENST00000592705 LPAR1Q92633 364 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 CDKL2Q92772 493 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 TUBB6Q9BUF5 446 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 TEX13BQ9BXU2 312 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 KIF9Q9HAQ2 790 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 CSF1RP07333 972 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 MYO1EQ12965 1108 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 FAM133BQ5BKY9 247 aaKnown RBP13.65□□□□□ -0.22
DNMT1-228ENST00000592705 NUDT18Q6ZVK8 323 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 CFAP61Q8NHU2 1237 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 FAM20AQ96MK3 541 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 E9PMD0 336 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 SLC25A27O95847 323 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 CYP2C19P33261 490 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 RGS2P41220 211 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 KNOP1Q1ED39 458 aaKnown RBP13.65□□□□□ -0.22
DNMT1-228ENST00000592705 NAALADL2Q58DX5 795 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 TTC30AQ86WT1 665 aa13.65□□□□□ -0.22
DNMT1-228ENST00000592705 ADSSL1Q8N142 457 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms