RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 TMPOP42166 694 aaKnown RBP4.15□□□□□ -1.75
ZNF540-207ENST00000589285 NEK4P51957 841 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 GABREP78334 506 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 PTF1AQ7RTS3 328 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 KCNH5Q8NCM2 988 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 NLGN2Q8NFZ4 835 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 CCDC140Q96MF4 163 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 FMNL2Q96PY5 1086 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 SPATA25Q9BR10 227 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 VTA1Q9NP79 307 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 CROTQ9UKG9 612 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.15□□□□□ -1.75
ZNF540-207ENST00000589285 PTPN22Q9Y2R2 807 aa4.15□□□□□ -1.75
ZNF540-207ENST00000589285 BRD4O60885 1362 aaPredicted RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 USP32Q8NFA0 1604 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TTC21AQ8NDW8 1320 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 WNK3Q9BYP7 1800 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 PRAMEF25A6NGN4 478 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 MMEP08473 750 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 PTPN1P18031 435 aaKnown RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 ITGA1P56199 1179 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TEPPQ6URK8 271 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 ETV3LQ6ZN32 361 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 AMIGO3Q86WK7 504 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 IP6K1Q92551 441 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 RUNDC1Q96C34 613 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 MTFR1LQ9H019 292 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 SEMA4AQ9H3S1 761 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 SLC6A20Q9NP91 592 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 CDC42EP3Q9UKI2 254 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TRBV23OR9-2A0A075B6M9 112 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 FAM47E-STBD1D6RA91 191 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 NFIBO00712 420 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 SRGAP3O43295 1099 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 BMP7P18075 431 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 IGFBP6P24592 240 aaPredicted RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 FOXO4P98177 505 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 EXOSC9Q06265 439 aaKnown RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TEFQ10587 303 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 AIMP1Q12904 312 aaKnown RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 STRN3Q13033 797 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 MROH9Q5TGP6 573 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 LRSAM1Q6UWE0 723 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 GPR155Q7Z3F1 870 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 SKAP1Q86WV1 359 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TSPYL6Q8N831 410 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 FEZF2Q8TBJ5 459 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 MKL1Q969V6 931 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 CCDC120Q96HB5 630 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 FAM84AQ96KN4 292 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 CD320Q9NPF0 282 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 MAP2P11137 1827 aaKnown RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 POLR3AO14802 1390 aaPredicted RBP4.14□□□□□ -1.75
ZNF540-207ENST00000589285 FLT4P35916 1363 aa4.14□□□□□ -1.75
ZNF540-207ENST00000589285 TRPM3Q9HCF6 1732 aaPredicted RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TOPAZ1Q8N9V7 1692 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 THSD7AQ9UPZ6 1657 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 DVL2O14641 736 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 FFAR3O14843 346 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 KCNQ2O43526 872 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 MLLT6P55198 1093 aaPredicted RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 ADAM9Q13443 819 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 C1orf141Q5JVX7 400 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 UNQ6494/PRO21346Q6UXR6 183 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 NIM1KQ8IY84 436 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 LRRC56Q8IYG6 542 aaPredicted RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 Q8N1Y9 231 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 GPR101Q96P66 508 aaPredicted RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TACO1Q9BSH4 297 aaKnown RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 AP5M1Q9H0R1 490 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TEX51A0A1B0GUA7 166 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TCAF2A6NFQ2 919 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TRAF5O00463 557 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 PDE8AO60658 829 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 STAT3P40763 770 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 CORO7P57737 925 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TMEM177Q53S58 311 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 C20orf194Q5TEA3 1177 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 MCTP2Q6DN12 878 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 SDE2Q6IQ49 451 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 CNKSR3Q6P9H4 555 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.13□□□□□ -1.75
ZNF540-207ENST00000589285 APPBP2Q92624 585 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 EPB41L1Q9H4G0 881 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 KCTD3Q9Y597 815 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 ITSN1Q15811 1721 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 TNS3Q68CZ2 1445 aa4.13□□□□□ -1.75
ZNF540-207ENST00000589285 RAP1GAPP47736 663 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 SLC4A10Q6U841 1118 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 KCTD1Q719H9 257 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 FBXW5Q969U6 566 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 PEX11GQ96HA9 241 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 PTPN18Q99952 460 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 ASH2LQ9UBL3 628 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 TSPYL4Q9UJ04 414 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 ALS2Q96Q42 1657 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 PCNTO95613 3336 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 A0A087X0B3 334 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 TLDC2A0PJX2 215 aa4.12□□□□□ -1.75
ZNF540-207ENST00000589285 PTPDC1A2A3K4 754 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms